Gene

slitrk3b

ID
ZDB-GENE-070912-352
Name
SLIT and NTRK-like family, member 3b
Symbol
slitrk3b Nomenclature History
Previous Names
  • si:dkey-116g14.1
Type
protein_coding_gene
Location
Chr: 2 Mapping Details/Browsers
Description
Predicted to be involved in axonogenesis and positive regulation of synapse assembly. Predicted to be located in membrane. Predicted to be active in GABA-ergic synapse and postsynaptic density membrane. Is expressed in head; nervous system; and neuroepithelial cell. Orthologous to human SLITRK3 (SLIT and NTRK like family member 3).
Genome Resources
Note
Should be associated with Gene ID: 137488017 as NCBI Gene ID: 100007758 was merged into Gene ID: 137488017.
Comparative Information
Expression
All Expression Data
7 figures from Round et al., 2014
Cross-Species Comparison
High Throughput Data
Thisse Expression Data
No data available
Wild Type Expression Summary
Phenotype
All Phenotype Data
No data available
Cross-Species Comparison
Alliance
Phenotype Summary
Mutations
Mutants
Allele Type Localization Consequence Mutagen Supplier
sa10873Allele with one point mutationUnknownPremature StopENU
European Zebrafish Resource Center (EZRC) (order this)
Zebrafish International Resource Center (ZIRC) (order this)
sa39881Allele with one point mutationUnknownPremature StopENU
Zebrafish International Resource Center (ZIRC) (order this)
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Sequence Targeting Reagents
Targeting Reagent Created Alleles Citations
CRISPR1-slitrk3b
    		 (2)
    CRISPR2-slitrk3b
      		 (2)
      CRISPR3-slitrk3b
        		 (2)
        CRISPR4-slitrk3b
          		 (2)
          CRISPR5-slitrk3b
            		 (2)
            CRISPR6-slitrk3b
              		 (2)
              CRISPR7-slitrk3b
                		 (2)
                CRISPR8-slitrk3b
                  		 (2)
                  1 - 8 of 8
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                  Human Disease
                  Associated With slitrk3b Human Ortholog
                  No data available
                  Associated With slitrk3b Via Experimental Models
                  No data available
                  Gene Ontology
                  Protein Domains
                  Domain, Family, and Site Summary
                  Type InterPro ID Name
                  Domain IPR000483 Cysteine-rich flanking region, C-terminal
                  Homologous_superfamily IPR032675 Leucine-rich repeat domain superfamily
                  Repeat IPR001611 Leucine-rich repeat
                  Repeat IPR003591 Leucine-rich repeat, typical subtype
                  1 - 4 of 4
                  Domain Details Per Protein
                  Protein Additional Resources Length Cysteine-rich flanking region, C-terminal Leucine-rich repeat Leucine-rich repeat domain superfamily Leucine-rich repeat, typical subtype
                  UniProtKB:B0S7B6 InterPro 882
                  1 - 1 of 1
                  Transcripts
                  Genome Browsers
                  Genome Build: GRCz11Chromosome: 2
                  Type Name Annotation Method Has Havana Data Length (nt) Analysis
                  mRNA slitrk3b-201 (1)
                  Ensembl
                  		Ensembl 2,649 nt
                  ZFIN BLAST
                  mRNA slitrk3b-202 (1)
                  Ensembl
                  		Ensembl 3,043 nt
                  ZFIN BLAST
                  1 - 2 of 2
                  Interactions and Pathways
                  No data available
                  Antibodies
                  No data available
                  Plasmids
                  No data available
                  Constructs
                  No data available
                  Marker Relationships
                  Relationship Marker Type Marker Accession Numbers Citations
                  Contained inBACDKEY-116G14ZFIN Curated Data
                  1 - 1 of 1
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                  Sequences
                  Type Accession # Sequence Length (nt/aa) Analysis
                  RNARefSeq:XM_001346099 (1)
                  ZFIN BLASTNCBI BLASTMegaBLASTEnsemblUCSC BLAT
                  GenomicGenBank:BX663495 (1)80339 nt
                  MegaBLASTEnsembl
                  PolypeptideUniProtKB:B0S7B6 (1)882 aa
                  ZFIN BLASTSIB BLASTEnsembl Protein Blast
                  Orthology
                  Comparative Orthology
                  Alliance
                  Gene Tree
                  Ensembl
                  Species Symbol Chromosome Accession # Evidence
                  HumanSLITRK33
                  Conserved genome location (synteny) (1)
                  Amino acid sequence comparison (1)
                  MouseSlitrk33
                  Conserved genome location (synteny) (1)
                  Amino acid sequence comparison (1)
                  Citations
                  TSV
                  1 - 3 of 3
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