ZFIN is now using GRCz12tu for Genomic Data
Gene
zcchc2
- ID
- ZDB-GENE-070912-269
- Name
- zinc finger, CCHC domain containing 2
- Symbol
- zcchc2 Nomenclature History
- Previous Names
-
- si:ch211-273d2.3
- Type
- protein_coding_gene
- Location
- Chr: 2 Mapping Details/Browsers
- Genome Assembly
- GRCz12tu
- Annotation Status
- Current
- Description
- Orthologous to human ZCCHC2 (zinc finger CCHC-type containing 2).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- No data available
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
- No data available
Wild Type Expression Summary
- All Phenotype Data
- No data available
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
No data available
No data available
Human Disease
Domain, Family, and Site Summary
Domain Details Per Protein
| Protein | Additional Resources | Length | Zinc finger CCHC domain-containing protein 2 | Zinc finger, CCHC-type | Zinc finger, CCHC-type superfamily |
|---|---|---|---|---|---|
| UniProtKB:A0A8M9PEM6 | InterPro | 894 | |||
| UniProtKB:A0A8M9PXK9 | InterPro | 856 | |||
| UniProtKB:A0A8M9PRF7 | InterPro | 858 | |||
| UniProtKB:A0A8M9PRS1 | InterPro | 856 | |||
| UniProtKB:A0A8M2BFR5 | InterPro | 858 |
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| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| mRNA |
zcchc2-201
(1)
|
Ensembl | 1,232 nt | ||
| mRNA |
zcchc2-202
(1)
|
Ensembl | 794 nt | ||
| mRNA |
zcchc2-203
(1)
|
Ensembl | 2,658 nt |
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Interactions and Pathways
No data available
Plasmids
No data available
No data available
| Relationship | Marker Type | Marker | Accession Numbers | Citations |
|---|---|---|---|---|
| Contained in | BAC | CH211-273D2 | ZFIN Curated Data |
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| Type | Accession # | Genome Assembly | Length (nt/aa) | Analysis |
|---|---|---|---|---|
| RNA | RefSeq:XM_073930663 (1) | GRCz12tu | 3890 nt | |
| Genomic | GenBank:BX296527 (1) | 185706 nt | ||
| Polypeptide | UniProtKB:A0A8M9PEM6 (1) | 894 aa |
- Elkon, R., Milon, B., Morrison, L., Shah, M., Vijayakumar, S., Racherla, M., Leitch, C.C., Silipino, L., Hadi, S., Weiss-Gayet, M., Barras, E., Schmid, C.D., Ait-Lounis, A., Barnes, A., Song, Y., Eisenman, D.J., Eliyahu, E., Frolenkov, G.I., Strome, S.E., Durand, B., Zaghloul, N.A., Jones, S.M., Reith, W., Hertzano, R. (2015) RFX transcription factors are essential for hearing in mice. Nature communications. 6:8549
- Briolat, V., Jouneau, L., Carvalho, R., Palha, N., Langevin, C., Herbomel, P., Schwartz, O., Spaink, H.P., Levraud, J.P., Boudinot, P. (2014) Contrasted Innate Responses to Two Viruses in Zebrafish: Insights into the Ancestral Repertoire of Vertebrate IFN-Stimulated Genes. Journal of immunology (Baltimore, Md. : 1950). 192:4328-41
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