Gene
ftr06
- ID
- ZDB-GENE-070912-228
- Name
- finTRIM family, member 6
- Symbol
- ftr06 Nomenclature History
- Previous Names
-
- si:ch211-235o23.7 (1)
- Type
- protein_coding_gene
- Location
- Chr: 2 Mapping Details/Browsers
- Description
- Predicted to enable several functions, including RNA-directed DNA polymerase activity; aspartic-type endopeptidase activity; and zinc ion binding activity. Predicted to act upstream of or within DNA integration; innate immune response; and proteolysis. Predicted to be located in cytoplasm.
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- No data available
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
- No data available
Wild Type Expression Summary
- All Phenotype Data
- No data available
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
No data available
No data available
Human Disease
Domain, Family, and Site Summary
Domain Details Per Protein
Protein | Additional Resources | Length | B30.2/SPRY domain | B30.2/SPRY domain superfamily | B-box-type zinc finger | Butyrophylin-like, SPRY domain | Concanavalin A-like lectin/glucanase domain superfamily | E3 ubiquitin-protein ligase TRIM/RNF | SPRY-associated | SPRY domain | Zinc finger, RING/FYVE/PHD-type | Zinc finger, RING-type | Zinc finger, RING-type, conserved site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
UniProtKB:A0A8M9PTB5 | InterPro | 550 | |||||||||||
UniProtKB:A0A8M6YUB0 | InterPro | 553 | |||||||||||
UniProtKB:A0A8M6Z254 | InterPro | 553 | |||||||||||
UniProtKB:A0A8M9PC86 | InterPro | 1498 |
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Interactions and Pathways
No data available
Plasmids
No data available
No data available
Relationship | Marker Type | Marker | Accession Numbers | Citations |
---|---|---|---|---|
Contained in | BAC | CH211-235O23 | ZFIN Curated Data |
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Type | Accession # | Sequence | Length (nt/aa) | Analysis |
---|---|---|---|---|
RNA | RefSeq:XM_021468640 (1) | 3771 nt | ||
Genomic | GenBank:BX572635 (1) | 124717 nt | ||
Polypeptide | UniProtKB:A0A8M9PC86 (1) | 1498 aa |
No data available
- Langevin, C., Levraud, J.P., Boudinot, P. (2018) Fish antiviral tripartite motif (TRIM) proteins. Fish & shellfish immunology. 86:724-733
- Boudinot, P., van der Aa, L.M., Jouneau, L., Du Pasquier, L., Pontarotti, P., Briolat, V., Benmansour, A., and Levraud, J.P. (2011) Origin and Evolution of TRIM Proteins: New Insights from the Complete TRIM Repertoire of Zebrafish and Pufferfish. PLoS One. 6(7):e22022
- van der Aa, L.M., Levraud, J.P., Yahmi, M., Lauret, E., Briolat, V., Herbomel, P., Benmansour, A., and Boudinot, P. (2009) A large new subset of TRIM genes highly diversified by duplication and positive selection in teleost fish. BMC Biology. 7:7
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