ZFIN is now using GRCz12tu for Genomic Data
Gene
si:ch211-80h18.1
- ID
- ZDB-GENE-070705-257
- Name
- si:ch211-80h18.1
- Symbol
- si:ch211-80h18.1 Nomenclature History
- Previous Names
-
- si:ct574549.1
- Type
- protein_coding_gene
- Location
- Chr: 19 Mapping Details/Browsers
- Genome Assembly
- GRCz12tu
- Annotation Status
- Current
- Description
- Is expressed in otolith.
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- 1 figure from Kalka et al., 2019
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
- No data available
Wild Type Expression Summary
- All Phenotype Data
- No data available
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
| Allele | Type | Localization | Consequence | Mutagen | Supplier |
|---|---|---|---|---|---|
| la020793Tg | Transgenic insertion | Unknown | Unknown | DNA | |
| sa29129 | Allele with one point mutation | Unknown | Splice Site | ENU | |
| sa36756 | Allele with one point mutation | Unknown | Premature Stop | ENU | |
| sa36757 | Allele with one point mutation | Unknown | Splice Site | ENU |
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No data available
Human Disease
Domain, Family, and Site Summary
No data available
Domain Details Per Protein
| Protein | Additional Resources | Length |
|---|---|---|
| UniProtKB:A0A8M9PGF1 | InterPro | 674 |
| UniProtKB:A0A8M3AJX3 | InterPro | 699 |
| UniProtKB:A0A8M9PAY9 | InterPro | 676 |
| UniProtKB:A0A8M2B687 | InterPro | 663 |
| UniProtKB:A5WW56 | InterPro | 638 |
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| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| mRNA |
si:ch211-80h18.1-201
(1)
|
Ensembl | 2,443 nt | ||
| mRNA |
si:ch211-80h18.1-202
(1)
|
Ensembl | 326 nt | ||
| mRNA |
si:ch211-80h18.1-203
(1)
|
Ensembl | 828 nt | ||
| mRNA |
si:ch211-80h18.1-204
(1)
|
Ensembl | 488 nt | ||
| mRNA |
si:ch211-80h18.1-205
(1)
|
Ensembl | 1,023 nt |
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Interactions and Pathways
No data available
Plasmids
No data available
No data available
| Relationship | Marker Type | Marker | Accession Numbers | Citations |
|---|---|---|---|---|
| Contained in | BAC | CH211-80H18 | ZFIN Curated Data |
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| Type | Accession # | Genome Assembly | Length (nt/aa) | Analysis |
|---|---|---|---|---|
| RNA | RefSeq:NM_001128332 (1) | 2443 nt | ||
| Genomic | GenBank:CT574549 (1) | 118955 nt | ||
| Polypeptide | UniProtKB:A0AB32T7J5 (1) | 711 aa |
No data available
- Jimenez, E., Slevin, C.C., Song, W., Chen, Z., Frederickson, S.C., Gildea, D., Wu, W., Elkahloun, A.G., Ovcharenko, I., Burgess, S.M. (2022) A regulatory network of Sox and Six transcription factors initiate a cell fate transformation during hearing regeneration in adult zebrafish. Cell genomics. 2(9):
- Kalka, M., Markiewicz, N., Ptak, M., Sone, E.D., Ożyhar, A., Dobryszycki, P., Wojtas, M. (2019) In vivo and in vitro analysis of starmaker activity in zebrafish otolith biomineralization. FASEB journal : official publication of the Federation of American Societies for Experimental Biology. 33(6):6877-6886
- Elkon, R., Milon, B., Morrison, L., Shah, M., Vijayakumar, S., Racherla, M., Leitch, C.C., Silipino, L., Hadi, S., Weiss-Gayet, M., Barras, E., Schmid, C.D., Ait-Lounis, A., Barnes, A., Song, Y., Eisenman, D.J., Eliyahu, E., Frolenkov, G.I., Strome, S.E., Durand, B., Zaghloul, N.A., Jones, S.M., Reith, W., Hertzano, R. (2015) RFX transcription factors are essential for hearing in mice. Nature communications. 6:8549
- Varshney, G.K., Lu, J., Gildea, D., Huang, H., Pei, W., Yang, Z., Huang, S.C., Schoenfeld, D.S., Pho, N., Casero, D., Hirase, T., Mosbrook-Davis, D.M., Zhang, S., Jao, L.E., Zhang, B., Woods, I.G., Zimmerman, S., Schier, A.F., Wolfsberg, T., Pellegrini, M., Burgess, S.M., and Lin, S. (2013) A large-scale zebrafish gene knockout resource for the genome-wide study of gene function. Genome research. 23(4):727-735
- Wang, D., Jao, L.E., Zheng, N., Dolan, K., Ivey, J., Zonies, S., Wu, X., Wu, K., Yang, H., Meng, Q., Zhu, Z., Zhang, B., Lin, S., and Burgess, S.M. (2007) Efficient genome-wide mutagenesis of zebrafish genes by retroviral insertions. Proceedings of the National Academy of Sciences of the United States of America. 104(30):12428-12433
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