ZFIN is now using GRCz12tu for Genomic Data
Gene
colgalt1b
- ID
- ZDB-GENE-070424-114
- Name
- collagen beta(1-O)galactosyltransferase 1b
- Symbol
- colgalt1b Nomenclature History
- Previous Names
-
- si:ch211-114l13.7
- Type
- protein_coding_gene
- Location
- Chr: 1 Mapping Details/Browsers
- Genome Assembly
- GRCz12tu
- Annotation Status
- Current
- Description
- Predicted to enable procollagen galactosyltransferase activity. Predicted to be involved in positive regulation of collagen fibril organization. Predicted to be located in endoplasmic reticulum lumen. Is expressed in female organism. Human ortholog(s) of this gene implicated in brain small vessel disease 3. Orthologous to human COLGALT1 (collagen beta(1-O)galactosyltransferase 1).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- 1 figure from Newman et al., 2019
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
- No data available
Wild Type Expression Summary
- All Phenotype Data
- No data available
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
Human Disease
| Disease Ontology Term | Multi-Species Data | OMIM Term | OMIM Phenotype ID |
|---|---|---|---|
| brain small vessel disease 3 | Alliance | Brain small vessel disease 3 | 618360 |
Domain, Family, and Site Summary
Domain Details Per Protein
| Protein | Additional Resources | Length | Collagen-modifying Glycosyltransferase 25 | Glycosyl transferase, family 25 | Nucleotide-diphospho-sugar transferases |
|---|---|---|---|---|---|
| UniProtKB:A5PMF6 | InterPro | 604 |
- Genome Browsers
| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| mRNA |
colgalt1 (1 of many)-201
(1)
|
Ensembl | 3,636 nt |
Interactions and Pathways
No data available
Plasmids
No data available
- Genome Browsers
- Comparative Orthology
- Alliance