Gene

tnrc6c2

ID
ZDB-GENE-061207-48
Name
trinucleotide repeat containing adaptor 6C2
Symbol
tnrc6c2 Nomenclature History
Previous Names
  • si:dkey-10p5.9
Type
protein_coding_gene
Location
Chr: 6 Mapping Details/Browsers
Description
Predicted to enable RNA binding activity. Predicted to be involved in miRNA-mediated post-transcriptional gene silencing and positive regulation of nuclear-transcribed mRNA poly(A) tail shortening. Predicted to act upstream of or within regulation of translation and regulatory ncRNA-mediated gene silencing. Predicted to be located in cytosol. Predicted to be active in P-body and nucleoplasm. Orthologous to human TNRC6C (trinucleotide repeat containing adaptor 6C).
Genome Resources
Note
None
Comparative Information
Expression
All Expression Data
No data available
Cross-Species Comparison
High Throughput Data
Thisse Expression Data
No data available
Wild Type Expression Summary
Phenotype
All Phenotype Data
No data available
Cross-Species Comparison
Alliance
Phenotype Summary
Mutations
Mutants
No data available
Sequence Targeting Reagents
No data available
Human Disease
Associated With tnrc6c2 Human Ortholog
No data available
Associated With tnrc6c2 Via Experimental Models
No data available
Gene Ontology
Protein Domains
Domain, Family, and Site Summary
Type InterPro ID Name
Domain IPR000504 RNA recognition motif domain
Domain IPR015940 Ubiquitin-associated domain
Domain IPR019486 Argonaute hook domain
Domain IPR026805 GW182, middle domain
Domain IPR032226 TNRC6, PABC binding domain
1 - 5 of 11 Show all
Domain Details Per Protein
Protein Additional Resources Length Argonaute hook domain GW182 domain-containing protein GW182, middle domain Nucleotide-binding alpha-beta plait domain superfamily RNA-binding domain superfamily RNA recognition motif domain TNRC6C, RNA recognition motif TNRC6, PABC binding domain Trinucleotide repeat-containing gene 6C protein, UBA domain UBA-like superfamily Ubiquitin-associated domain
UniProtKB:A0A8M3ATC8 InterPro 1571
UniProtKB:A0A8M9PMP3 InterPro 1534
UniProtKB:A0A8M6YYV7 InterPro 1534
UniProtKB:A0A8M9Q4I3 InterPro 1571
1 - 4 of 4
Transcripts
Genome Browsers
Genome Build: GRCz11Chromosome: 6
Type Name Annotation Method Has Havana Data Length (nt) Analysis
mRNA tnrc6c2-201 (1)
Ensembl
Ensembl 9,286 nt
ZFIN BLAST
mRNA tnrc6c2-202 (1)
Ensembl
Ensembl 5,484 nt
ZFIN BLAST
1 - 2 of 2
Interactions and Pathways
No data available
Antibodies
No data available
Plasmids
No data available
Constructs
No data available
Marker Relationships
Relationship Marker Type Marker Accession Numbers Citations
Contained inBACDKEY-10P5ZFIN Curated Data
Contained inBACDKEY-260O3ZFIN Curated Data
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Show
Sequences
Type Accession # Sequence Length (nt/aa) Analysis
RNARefSeq:XM_009302365 (1)
ZFIN BLASTNCBI BLASTMegaBLASTEnsemblUCSC BLAT
GenomicGenBank:AL954746 (1)231840 nt
MegaBLAST
PolypeptideUniProtKB:A0A8M3ATC8 (1)1571 aa
ZFIN BLASTSIB BLASTEnsembl Protein Blast
Orthology
Comparative Orthology
Alliance
Gene Tree
Ensembl
No data available
Citations
No data available
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