Gene

lysmd1

ID

ZDB-GENE-060929-1094

Name

LysM, putative peptidoglycan-binding, domain containing 1

Symbol

lysmd1 Nomenclature History

Previous Names

zgc:153301

Type

protein_coding_gene

Location

Chr: 16 Mapping Details/Browsers

Description

Is expressed in central nervous system. Orthologous to human LYSMD1 (LysM domain containing 1).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

1 figure from Laroche et al., 2013

Cross-Species Comparison

High Throughput Data

GEO (1)

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Thisse Expression Data

No data available

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With lysmd1 Human Ortholog

No data available

Associated With lysmd1 Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR018392	LysM domain
Family	IPR045030	LysM and putative peptidoglycan-binding domain-containing protein 1-4
Homologous_superfamily	IPR036779	LysM domain superfamily

Domain Details Per Protein

Protein	Length	LysM and putative peptidoglycan-binding domain-containing protein 1-4	LysM domain	LysM domain superfamily
UniProtKB:A0A8M9PD93 InterPro	151
UniProtKB:Q08CB1 InterPro	211

Transcripts

Genome Browsers

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	lysmd1-201 (1) Ensembl	Havana	2033 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations