Gene
ankef1b
- ID
- ZDB-GENE-060810-68
- Name
- ankyrin repeat and EF-hand domain containing 1b
- Symbol
- ankef1b Nomenclature History
- Previous Names
-
- ankrd5b
- im:7156990
- Type
- protein_coding_gene
- Location
- Chr: 17 Mapping Details/Browsers
- Description
- Predicted to enable calcium ion binding activity. Is expressed in several structures, including digestive system; extension; heart; otic vesicle; and pleuroperitoneal region. Orthologous to human ANKEF1 (ankyrin repeat and EF-hand domain containing 1).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- 4 figures from 2 publications
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
-
- IMAGE:7156990 (1 image)
Wild Type Expression Summary
- All Phenotype Data
- No data available
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
Allele | Type | Localization | Consequence | Mutagen | Supplier |
---|---|---|---|---|---|
sa32131 | Allele with one point mutation | Unknown | Premature Stop | ENU | |
sa32132 | Allele with one point mutation | Unknown | Premature Stop | ENU | |
sa36347 | Allele with one point mutation | Unknown | Premature Stop | ENU | |
sa36348 | Allele with one point mutation | Unknown | Splice Site | ENU | |
sa39151 | Allele with one point mutation | Unknown | Premature Stop | ENU | |
sa42881 | Allele with one point mutation | Unknown | Premature Stop | ENU |
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No data available
Human Disease
Domain, Family, and Site Summary
Domain Details Per Protein
Protein | Additional Resources | Length | Ankyrin repeat | Ankyrin Repeat and EF-hand Domain-containing | Ankyrin repeat-containing domain superfamily | EF-hand domain | EF-hand domain pair |
---|---|---|---|---|---|---|---|
UniProtKB:A0A8M9P0D1 | InterPro | 530 | |||||
UniProtKB:A0AB32T7R5 | InterPro | 717 |
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Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
---|---|---|---|---|---|
mRNA |
ankef1b-201
(1)
|
Ensembl | 2,186 nt | ||
mRNA |
ankef1b-202
(1)
|
Ensembl | 1,992 nt |
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Interactions and Pathways
No data available
Plasmids
No data available
No data available
Relationship | Marker Type | Marker | Accession Numbers | Citations |
---|---|---|---|---|
Contained in | BAC | CH73-93A6 | ZFIN Curated Data | |
Encodes | EST | IMAGE:7156990 | Thisse et al., 2004 |
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Type | Accession # | Sequence | Length (nt/aa) | Analysis |
---|---|---|---|---|
RNA | RefSeq:XM_021467307 (1) | 2442 nt | ||
Genomic | GenBank:BX004854 (1) | 157010 nt | ||
Polypeptide | UniProtKB:A0AB32T7R5 (1) | 717 aa |
- Huang, J., Sun, L., Mennigen, J.A., Liu, Y., Liu, S., Zhang, M., Wang, Q., Tu, W. (2020) Developmental toxicity of the novel PFOS alternative OBS in developing zebrafish: An emphasis on cilia disruption. Journal of hazardous materials. 409:124491
- Daniel, J.G., Panizzi, J.R. (2019) Spatiotemporal expression profile of embryonic and adult ankyrin repeat and EF-hand domain containing protein 1-encoding genes ankef1a and ankef1b in zebrafish. Gene expression patterns : GEP. 34:119069
- Braasch, I., Gehrke, A.R., Smith, J.J., Kawasaki, K., Manousaki, T., Pasquier, J., Amores, A., Desvignes, T., Batzel, P., Catchen, J., Berlin, A.M., Campbell, M.S., Barrell, D., Martin, K.J., Mulley, J.F., Ravi, V., Lee, A.P., Nakamura, T., Chalopin, D., Fan, S., Wcisel, D., Cañestro, C., Sydes, J., Beaudry, F.E., Sun, Y., Hertel, J., Beam, M.J., Fasold, M., Ishiyama, M., Johnson, J., Kehr, S., Lara, M., Letaw, J.H., Litman, G.W., Litman, R.T., Mikami, M., Ota, T., Saha, N.R., Williams, L., Stadler, P.F., Wang, H., Taylor, J.S., Fontenot, Q., Ferrara, A., Searle, S.M., Aken, B., Yandell, M., Schneider, I., Yoder, J.A., Volff, J.N., Meyer, A., Amemiya, C.T., Venkatesh, B., Holland, P.W., Guiguen, Y., Bobe, J., Shubin, N.H., Di Palma, F., Alföldi, J., Lindblad-Toh, K., Postlethwait, J.H. (2016) The spotted gar genome illuminates vertebrate evolution and facilitates human-teleost comparisons. Nature Genetics. 48(4):427-37
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