ZFIN is now using GRCz12tu for Genomic Data
Gene
pdzd2
- ID
- ZDB-GENE-060526-297
- Name
- PDZ domain containing 2
- Symbol
- pdzd2 Nomenclature History
- Previous Names
-
- si:dkey-3h3.1
- Type
- protein_coding_gene
- Location
- Chr: 5 Mapping Details/Browsers
- Genome Assembly
- GRCz12tu
- Annotation Status
- Current
- Description
- Predicted to be located in cytoplasm; extracellular region; and nucleus. Orthologous to human PDZD2 (PDZ domain containing 2).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- No data available
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
- No data available
Wild Type Expression Summary
- All Phenotype Data
- No data available
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
| Allele | Type | Localization | Consequence | Mutagen | Supplier |
|---|---|---|---|---|---|
| sa11937 | Allele with one point mutation | Unknown | Premature Stop | ENU | |
| sa12538 | Allele with one point mutation | Unknown | Premature Stop | ENU | |
| sa12548 | Allele with one point mutation | Unknown | Premature Stop | ENU | |
| sa18816 | Allele with one point mutation | Unknown | Premature Stop | ENU | |
| sa20502 | Allele with one point mutation | Unknown | Premature Stop | ENU | |
| sa20503 | Allele with one point mutation | Unknown | Premature Stop | ENU | |
| sa33671 | Allele with one point mutation | Unknown | Premature Stop | ENU | |
| sa33672 | Allele with one point mutation | Unknown | Premature Stop | ENU | |
| sa33673 | Allele with one point mutation | Unknown | Splice Site | ENU | |
| sa40523 | Allele with one point mutation | Unknown | Splice Site | ENU |
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No data available
Human Disease
Domain, Family, and Site Summary
Domain Details Per Protein
| Protein | Additional Resources | Length | PDZ domain | PDZ superfamily |
|---|---|---|---|---|
| UniProtKB:A0A8M6Z737 | InterPro | 1302 | ||
| UniProtKB:A0A8M9PK28 | InterPro | 2247 | ||
| UniProtKB:A0A8M2BCX3 | InterPro | 2251 | ||
| UniProtKB:A0A8M3AZV3 | InterPro | 2433 | ||
| UniProtKB:A0A8M9PR38 | InterPro | 2065 |
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Interactions and Pathways
No data available
Plasmids
No data available
No data available
| Relationship | Marker Type | Marker | Accession Numbers | Citations |
|---|---|---|---|---|
| Contained in | BAC | DKEY-3H3 | ZFIN Curated Data | |
| Contained in | BAC | DKEY-207E22 | ZFIN Curated Data |
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| Type | Accession # | Genome Assembly | Length (nt/aa) | Analysis |
|---|---|---|---|---|
| RNA | RefSeq:XM_073951252 (1) | GRCz12tu | 6744 nt | |
| Genomic | GenBank:BX470172 | 243270 nt | ||
| Polypeptide | UniProtKB:A0A8M3AZV3 (1) | 2433 aa |
No data available