ZFIN is now using GRCz12tu for Genomic Data
Gene
olfch1
- ID
- ZDB-GENE-060503-819
- Name
- olfactory receptor C family, h1
- Symbol
- olfch1 Nomenclature History
- Previous Names
- Type
- protein_coding_gene
- Location
- Chr: 18 Mapping Details/Browsers
- Genome Assembly
- GRCz12tu
- Annotation Status
- Current
- Description
- Predicted to enable G protein-coupled receptor activity. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be active in plasma membrane.
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- No data available
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
- No data available
Wild Type Expression Summary
- All Phenotype Data
- No data available
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
No data available
Human Disease
Domain, Family, and Site Summary
| Type | InterPro ID | Name |
|---|---|---|
| Conserved_site | IPR017979 | GPCR, family 3, conserved site |
| Domain | IPR001828 | Receptor, ligand binding region |
| Domain | IPR011500 | GPCR, family 3, nine cysteines domain |
| Domain | IPR017978 | GPCR family 3, C-terminal |
| Family | IPR000068 | GPCR, family 3, extracellular calcium-sensing receptor-related |
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Domain Details Per Protein
| Protein | Additional Resources | Length | GPCR, family 3 | GPCR, family 3, conserved site | GPCR family 3, C-terminal | GPCR, family 3, extracellular calcium-sensing receptor-related | GPCR, family 3, nine cysteines domain | GPCR, family 3, nine cysteines domain superfamily | GPCR, family 3, vomeronasal receptor, type 2 | Periplasmic binding protein-like I | Receptor, ligand binding region |
|---|---|---|---|---|---|---|---|---|---|---|---|
| UniProtKB:A0A0R4IC00 | InterPro | 853 | |||||||||
| UniProtKB:A0A8M3AKH1 | InterPro | 570 | |||||||||
| UniProtKB:A0A8M3AS15 | InterPro | 412 | |||||||||
| UniProtKB:A0A8M3AUY6 | InterPro | 455 |
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| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| mRNA |
olfch1-201
(1)
|
Ensembl | 2,562 nt |
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Interactions and Pathways
No data available
Plasmids
No data available
No data available
| Relationship | Marker Type | Marker | Accession Numbers | Citations |
|---|---|---|---|---|
| Contained in | BAC | DKEY-245I2 | ZFIN Curated Data |
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| Type | Accession # | Genome Assembly | Length (nt/aa) | Analysis |
|---|---|---|---|---|
| RNA | RefSeq:NM_001110290 (1) | 2562 nt | ||
| Genomic | GenBank:AL844192 (1) | 219054 nt | ||
| Polypeptide | UniProtKB:A0A0R4IC00 (1) | 853 aa |
No data available
- Yang, L., Jiang, H., Wang, Y., Lei, Y., Chen, J., Sun, N., Lv, W., Wang, C., Near, T.J., He, S. (2019) Expansion of vomeronasal receptor genes (OlfC) in the evolution of fright reaction in Ostariophysan fishes. Communications biology. 2:235
- Ahuja, G., Reichel, V., Kowatschew, D., Syed, A.S., Kotagiri, A.K., Oka, Y., Weth, F., Korsching, S.I. (2018) Overlapping but distinct topology for zebrafish V2R-like olfactory receptors reminiscent of odorant receptor spatial expression zones. BMC Genomics. 19:383
- Saraiva, L.R., Ahuja, G., Ivandic, I., Syed, A.S., Marioni, J.C., Korsching, S.I., Logan, D.W. (2015) Molecular and neuronal homology between the olfactory systems of zebrafish and mouse. Scientific Reports. 5:11487
- Alioto, T.S., and Ngai, J. (2006) The repertoire of olfactory C family G protein-coupled receptors in zebrafish: candidate chemosensory receptors for amino acids. BMC Genomics. 7(1):309
- Hashiguchi, Y., and Nishida, M. (2006) Evolution and origin of vomeronasal-type odorant receptor gene repertoire in fishes. BMC Evolutionary Biology. 6:76
- Hashiguchi, Y., and Nishida, M. (2005) Evolution of vomeronasal-type odorant receptor genes in the zebrafish genome. Gene. 362C:19-28
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