ZFIN is now using GRCz12tu for Genomic Data
Gene
si:dkey-31e10.1
- ID
- ZDB-GENE-060503-356
- Name
- si:dkey-31e10.1
- Symbol
- si:dkey-31e10.1 Nomenclature History
- Previous Names
-
- sc:d0661
- Type
- protein_coding_gene
- Location
- Chr: 1 Mapping Details/Browsers
- Genome Assembly
- GRCz12tu
- Annotation Status
- Current
- Description
- Predicted to enable cell-cell adhesion mediator activity. Predicted to be involved in heterotypic cell-cell adhesion and negative regulation of neuroinflammatory response. Predicted to be located in plasma membrane. Predicted to be active in axon; cell surface; and neuronal cell body. Orthologous to human CD200 (CD200 molecule).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- 1 figure from Thisse et al., 2008
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
-
- cssl:d0661 (1 image)
Wild Type Expression Summary
- All Phenotype Data
- No data available
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
No data available
| Targeting Reagent | Created Alleles | Citations |
|---|---|---|
| CRISPR1-si:dkey-31e10.1 | (2) | |
| CRISPR2-si:dkey-31e10.1 | (2) |
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Human Disease
Domain, Family, and Site Summary
Domain Details Per Protein
| Protein | Additional Resources | Length | CD80-like, immunoglobulin C2-set | Immunoglobulin domain subtype | Immunoglobulin-like domain | Immunoglobulin-like domain superfamily | Immunoglobulin-like fold | Immunoglobulin V-set domain | OX-2 membrane glycoprotein-like |
|---|---|---|---|---|---|---|---|---|---|
| UniProtKB:A0A8M6Z6Q0 | InterPro | 271 | |||||||
| UniProtKB:A0A8M9PPK5 | InterPro | 279 | |||||||
| UniProtKB:A0A8M9Q2R7 | InterPro | 281 |
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| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| mRNA |
si:dkey-31e10.1-201
(1)
|
Ensembl | 777 nt | ||
| mRNA |
si:dkey-31e10.1-202
(1)
|
Ensembl | 2,265 nt | ||
| mRNA |
si:dkey-31e10.1-203
(1)
|
Ensembl | 3,877 nt | ||
| mRNA |
si:dkey-31e10.1-204
(1)
|
Ensembl | 3,785 nt |
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Interactions and Pathways
No data available
Plasmids
No data available
No data available
| Relationship | Marker Type | Marker | Accession Numbers | Citations |
|---|---|---|---|---|
| Contained in | BAC | DKEY-31E10 | ZFIN Curated Data | |
| Encodes | EST | cssl:d0661 | Thisse et al., 2008 |
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| Type | Accession # | Genome Assembly | Length (nt/aa) | Analysis |
|---|---|---|---|---|
| RNA | RefSeq:XR_012405468 (1) | GRCz12tu | 1662 nt | |
| Genomic | GenBank:AL953910 (1) | 190793 nt | ||
| Polypeptide | UniProtKB:A0A8M9Q2R7 (1) | 281 aa |
No data available
- Sun, Y., Zhang, B., Luo, L., Shi, D.L., Wang, H., Cui, Z., Huang, H., Cao, Y., Shu, X., Zhang, W., Zhou, J., Li, Y., Du, J., Zhao, Q., Chen, J., Zhong, H., Zhong, T.P., Li, L., Xiong, J.W., Peng, J., Xiao, W., Zhang, J., Yao, J., Yin, Z., Mo, X., Peng, G., Zhu, J., Chen, Y., Zhou, Y., Liu, D., Pan, W., Zhang, Y., Ruan, H., Liu, F., Zhu, Z., Meng, A., ZAKOC Consortium (2019) Systematic genome editing of the genes on zebrafish Chromosome 1 by CRISPR/Cas9. Genome research. 30(1):118-26
- Elkon, R., Milon, B., Morrison, L., Shah, M., Vijayakumar, S., Racherla, M., Leitch, C.C., Silipino, L., Hadi, S., Weiss-Gayet, M., Barras, E., Schmid, C.D., Ait-Lounis, A., Barnes, A., Song, Y., Eisenman, D.J., Eliyahu, E., Frolenkov, G.I., Strome, S.E., Durand, B., Zaghloul, N.A., Jones, S.M., Reith, W., Hertzano, R. (2015) RFX transcription factors are essential for hearing in mice. Nature communications. 6:8549
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