ZFIN is now using GRCz12tu for Genomic Data

Gene

pcdh1g11

ID

ZDB-GENE-050609-7

Name

protocadherin 1 gamma 11

Symbol

pcdh1g11 Nomenclature History

Previous Names

None

Type

protein_coding_gene

Location

Chr: 10 Mapping Details/Browsers

Genome Assembly

GRCz11

Annotation Status

Unknown

Description

Predicted to enable cell adhesion molecule binding activity. Predicted to be involved in cell adhesion. Predicted to act upstream of or within homophilic cell-cell adhesion. Predicted to be located in membrane. Predicted to be active in plasma membrane. Orthologous to several human genes including PCDHGA1 (protocadherin gamma subfamily A, 1); PCDHGA10 (protocadherin gamma subfamily A, 10); and PCDHGA11 (protocadherin gamma subfamily A, 11).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

No data available

Cross-Species Comparison

High Throughput Data

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Thisse Expression Data

No data available

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With pcdh1g11 Human Ortholog

No data available

Associated With pcdh1g11 Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Conserved_site	IPR020894	Cadherin conserved site
Domain	IPR002126	Cadherin-like
Domain	IPR013164	Cadherin, N-terminal
Domain	IPR032455	Cadherin, cytoplasmic C-terminal domain
Family	IPR050174	Protocadherin/Cadherin-related Cell Adhesion
Homologous_superfamily	IPR015919	Cadherin-like superfamily

Domain Details Per Protein

Protein	Additional Resources	Length	Cadherin conserved site	Cadherin, cytoplasmic C-terminal domain	Cadherin-like	Cadherin-like superfamily	Cadherin, N-terminal	Protocadherin/Cadherin-related Cell Adhesion
UniProtKB:I6LC08	InterPro	888

Transcripts

Genome Browsers

ZFIN

Type	Name	Annotation Method	Has Havana Data	Length (nt)	Analysis
mRNA	pcdh1g11-202 (1) Ensembl	Ensembl		4,409 nt	Select Tool ZFIN BLAST
pseudogenic transcript	pcdh1g11-201 (1) Ensembl	Ensembl		4,365 nt	Select Tool ZFIN BLAST

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Genome Browsers: No data available

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations