Gene
cirbpa
- ID
- ZDB-GENE-050417-329
- Name
- cold inducible RNA binding protein a
- Symbol
- cirbpa Nomenclature History
- Previous Names
-
- wu:fb12a12
- wu:fb16h02
- wu:fb55a06
- wu:fc67h01
- wu:fj10g10
- zgc:109887
- zgc:112425
- Type
- protein_coding_gene
- Location
- Chr: 2 Mapping Details/Browsers
- Description
- Predicted to enable RNA binding activity. Predicted to be involved in positive regulation of mRNA splicing, via spliceosome. Predicted to be located in cytoplasm and nucleoplasm. Predicted to be part of spliceosomal complex. Is expressed in digestive system; nervous system; and pectoral fin. Orthologous to several human genes including CIRBP (cold inducible RNA binding protein).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- 14 figures from 2 publications
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
Wild Type Expression Summary
- All Phenotype Data
- No data available
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
Human Disease
Domain, Family, and Site Summary
| Type | InterPro ID | Name |
|---|---|---|
| Domain | IPR000504 | RNA recognition motif domain |
| Domain | IPR003954 | RNA recognition motif domain, eukaryotes |
| Family | IPR050441 | RNA-binding motif |
| Homologous_superfamily | IPR012677 | Nucleotide-binding alpha-beta plait domain superfamily |
| Homologous_superfamily | IPR035979 | RNA-binding domain superfamily |
Domain Details Per Protein
| Protein | Additional Resources | Length | Nucleotide-binding alpha-beta plait domain superfamily | RNA-binding domain superfamily | RNA-binding motif | RNA recognition motif domain | RNA recognition motif domain, eukaryotes |
|---|---|---|---|---|---|---|---|
| UniProtKB:A0A8M6Z3G7 | InterPro | 156 | |||||
| UniProtKB:Q566W6 | InterPro | 185 | |||||
| UniProtKB:A0AB32TYZ8 | InterPro | 184 |
- Genome Browsers
| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| mRNA |
cirbpa-201
(1)
|
Ensembl | 1,305 nt |
Interactions and Pathways
No data available
Plasmids
No data available