ZFIN is now using GRCz12tu for Genomic Data
Gene
ppp1r13l
- ID
- ZDB-GENE-050327-33
- Name
- protein phosphatase 1, regulatory subunit 13 like
- Symbol
- ppp1r13l Nomenclature History
- Previous Names
-
- zgc:113058
- Type
- protein_coding_gene
- Location
- Chr: 18 Mapping Details/Browsers
- Genome Assembly
- GRCz12tu
- Annotation Status
- Current
- Description
- Predicted to be involved in positive regulation of cell differentiation and regulation of transcription by RNA polymerase II. Human ortholog(s) of this gene implicated in cardiomyopathy. Orthologous to human PPP1R13L (protein phosphatase 1 regulatory subunit 13 like).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- No data available
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
- No data available
Wild Type Expression Summary
- All Phenotype Data
- No data available
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
Human Disease
| Disease Ontology Term | Multi-Species Data | OMIM Term | OMIM Phenotype ID |
|---|---|---|---|
| Arrhythmogenic cardiomyopathy with variable ectodermal abnormalities | 620519 |
Domain, Family, and Site Summary
| Type | InterPro ID | Name |
|---|---|---|
| Domain | IPR001452 | SH3 domain |
| Domain | IPR042722 | RelA-associated inhibitor, SH3 domain |
| Family | IPR028320 | RelA-associated inhibitor |
| Homologous_superfamily | IPR036028 | SH3-like domain superfamily |
| Homologous_superfamily | IPR036770 | Ankyrin repeat-containing domain superfamily |
| Repeat | IPR002110 | Ankyrin repeat |
Domain Details Per Protein
| Protein | Additional Resources | Length | Ankyrin repeat | Ankyrin repeat-containing domain superfamily | RelA-associated inhibitor | RelA-associated inhibitor, SH3 domain | SH3 domain | SH3-like domain superfamily |
|---|---|---|---|---|---|---|---|---|
| UniProtKB:Q58ER8 | InterPro | 784 | ||||||
| UniProtKB:Q1L9A3 | InterPro | 789 |
- Genome Browsers
| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| mRNA |
ppp1r13l-201
(1)
|
Ensembl | 3,337 nt | ||
| mRNA |
ppp1r13l-202
(1)
|
Ensembl | 3,394 nt | ||
| mRNA |
ppp1r13l-203
(1)
|
Ensembl | 4,073 nt |
Interactions and Pathways
No data available
Plasmids
No data available
- Genome Browsers