ZFIN is now using GRCz12tu for Genomic Data
Gene
smchd1
- ID
- ZDB-GENE-050211-6
- Name
- structural maintenance of chromosomes flexible hinge domain containing 1
- Symbol
- smchd1 Nomenclature History
- Previous Names
-
- kiaa0650l
- Type
- protein_coding_gene
- Location
- Chr: 7 Mapping Details/Browsers
- Genome Assembly
- GRCz12tu
- Annotation Status
- Current
- Description
- Acts upstream of or within with a positive effect on definitive hemopoiesis. Acts upstream of or within bone development and embryonic cranial skeleton morphogenesis. Predicted to be located in chromosome. Is expressed in head; hematopoietic system; mesoderm; and oocyte. Used to study choanal atresia. Human ortholog(s) of this gene implicated in facioscapulohumeral muscular dystrophy 2. Orthologous to human SMCHD1 (structural maintenance of chromosomes flexible hinge domain containing 1).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- 7 figures from 4 publications
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
- No data available
Wild Type Expression Summary
Phenotype Summary
Mutations
Human Disease
| Disease Ontology Term | Multi-Species Data | OMIM Term | OMIM Phenotype ID |
|---|---|---|---|
| facioscapulohumeral muscular dystrophy 2 | Alliance | Facioscapulohumeral muscular dystrophy 2, digenic | 158901 |
| Bosma arhinia microphthalmia syndrome | 603457 |
| Human Disease | Fish | Conditions | Citations |
|---|---|---|---|
| choanal atresia | zf195Tg + CRISPR1-smchd1 (AB) | standard conditions | Shaw et al., 2017 |
Domain, Family, and Site Summary
| Type | InterPro ID | Name |
|---|---|---|
| Domain | IPR010935 | SMCs flexible hinge |
| Domain | IPR055109 | SMCHD1, ribosomal S5 domain 2-like domain |
| Family | IPR038892 | Structural maintenance of chromosomes flexible hinge domain-containing protein 1 |
| Homologous_superfamily | IPR036277 | SMCs flexible hinge superfamily |
| Homologous_superfamily | IPR036890 | Histidine kinase/HSP90-like ATPase superfamily |
Domain Details Per Protein
| Protein | Additional Resources | Length | Histidine kinase/HSP90-like ATPase superfamily | SMCHD1, ribosomal S5 domain 2-like domain | SMCs flexible hinge | SMCs flexible hinge superfamily | Structural maintenance of chromosomes flexible hinge domain-containing protein 1 |
|---|---|---|---|---|---|---|---|
| UniProtKB:A0A8M3AUP8 | InterPro | 1983 |
| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| mRNA |
smchd1-201
(1)
|
Ensembl | 6,420 nt |
Interactions and Pathways
No data available
Plasmids
No data available
- Comparative Orthology
- Alliance