Gene

pdzrn4

ID
ZDB-GENE-041210-237
Name
PDZ domain containing ring finger 4
Symbol
pdzrn4 Nomenclature History
Previous Names
  • si:dkey-240a12.3
Type
protein_coding_gene
Location
Chr: 4 Mapping Details/Browsers
Description
Is expressed in basal plate midbrain region; nervous system; and pharyngeal arch. Orthologous to human PDZRN4 (PDZ domain containing ring finger 4).
Genome Resources
Note
None
Comparative Information
Expression
All Expression Data
6 figures from Thisse et al., 2005
Cross-Species Comparison
High Throughput Data
Thisse Expression Data
Wild Type Expression Summary
Phenotype
All Phenotype Data
No data available
Cross-Species Comparison
Alliance
Phenotype Summary
Mutations
Mutants
Allele Type Localization Consequence Mutagen Supplier
la015328TgTransgenic insertionUnknownUnknownDNA
sa2153Allele with one point mutationUnknownPremature StopENU
sa10439Allele with one point mutationUnknownPremature StopENU
sa31387Allele with one point mutationUnknownSplice SiteENU
1 - 4 of 4
Show
Sequence Targeting Reagents
No data available
Human Disease
Associated With pdzrn4 Human Ortholog
No data available
Associated With pdzrn4 Via Experimental Models
No data available
Gene Ontology
Protein Domains
Domain, Family, and Site Summary
Type InterPro ID Name
Domain IPR001478 PDZ domain
Family IPR051971 E3 ubiquitin-protein ligase PDZ domain-containing protein
Homologous_superfamily IPR036034 PDZ superfamily
1 - 3 of 3
Domain Details Per Protein
Protein Additional Resources Length E3 ubiquitin-protein ligase PDZ domain-containing protein PDZ domain PDZ superfamily
UniProtKB:Q5TYS9 InterPro 788
1 - 1 of 1
Transcripts
Genome Browsers
Genome Build: GRCz11Chromosome: 4
Type Name Annotation Method Has Havana Data Length (nt) Analysis
mRNA pdzrn4-201 (1) Ensembl 2,589 nt
1 - 1 of 1
Interactions and Pathways
No data available
Antibodies
No data available
Plasmids
No data available
Constructs
No data available
Marker Relationships
Relationship Marker Type Marker Accession Numbers Citations
Contained inBACCH211-250C23ZFIN Curated Data
Contained inBACDKEY-240A12ZFIN Curated Data
EncodesESTeu2444Thisse et al., 2005
1 - 3 of 3
Show
Sequences
Orthology
Comparative Orthology
Alliance
Gene Tree
Ensembl
Species Symbol Chromosome Accession # Evidence
HumanPDZRN412
Amino acid sequence comparison (1)
Conserved genome location (synteny) (1)
MousePdzrn415
Amino acid sequence comparison (1)
Conserved genome location (synteny) (1)
Citations