Gene

si:ch211-157b11.12

ID

ZDB-GENE-041111-80

Name

si:ch211-157b11.12

Symbol

si:ch211-157b11.12 Nomenclature History

Previous Names

im:7139423

Type

protein_coding_gene

Location

Chr: 6 Mapping Details/Browsers

Description

Predicted to be located in membrane. Orthologous to human C1orf159 (chromosome 1 open reading frame 159).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

1 figure from Thisse et al., 2004

Cross-Species Comparison

High Throughput Data

GEO (1)

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

IMAGE:7139423 (1 image)

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Allele	Type	Localization	Consequence	Mutagen	Supplier
sa40764	Allele with one point mutation	Unknown	Splice Site	ENU	Zebrafish International Resource Center (ZIRC) (order this) European Zebrafish Resource Center (EZRC) (order this)

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Sequence Targeting Reagents

No data available

Human Disease

Associated With si:ch211-157b11.12 Human Ortholog

No data available

Associated With si:ch211-157b11.12 Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Family	IPR027888	Protein of unknown function DUF4501

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Domain Details Per Protein

Protein	Additional Resources	Length
UniProtKB:A0A8M1P8K8	InterPro	190
UniProtKB:A0A8M9QAD6	InterPro	181
UniProtKB:A0A8M9QFF2	InterPro	195
UniProtKB:A0A8M1P2M6	InterPro	154
UniProtKB:A0AB32TVT7	InterPro	160

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Transcripts

Genome Browsers

Genome Build: GRCz11Chromosome: 6

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	si:ch211-157b11.12-201 (1) Ensembl	Ensembl	2,190 nt	Select Tool ZFIN BLAST
mRNA	si:ch211-157b11.12-202 (1) Ensembl	Ensembl	1,638 nt	Select Tool ZFIN BLAST
mRNA	si:ch211-157b11.12-203 (1) Ensembl	Ensembl	2,093 nt	Select Tool ZFIN BLAST

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Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

No data available

Marker Relationships

Relationship	Marker Type	Marker	Accession Numbers	Citations
Contained in	BAC	CH211-157B11	CR450814	ZFIN Curated Data
Encodes	EST	IMAGE:7139423	CK678295	Thisse et al., 2004

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Sequences

Type	Accession #	Length (nt/aa)	Analysis
RNA	RefSeq:NM_001326426 (1)	2185 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
Genomic	GenBank:CR450814 (1)	158142 nt	Select Tool MegaBLAST Ensembl
Polypeptide	UniProtKB:A0A8M9QFF2 (1)	195 aa	Select Tool ZFIN BLAST SIB BLAST Ensembl Protein Blast

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Species	Symbol	Chromosome	Accession #	Evidence
Human	C1orf159	1	Ensembl:ENSG00000131591 Gene:54991 HGNC:26062	Phylogenetic tree (1) Amino acid sequence comparison (1) Conserved genome location (synteny) (1)
Mouse	9430015G10Rik	4	Ensembl:ENSMUSG00000059939 Gene:230996 MGI:2444364	Conserved genome location (synteny) (1) Phylogenetic tree (1) Amino acid sequence comparison (1)

Citations

Include unpublished citations

Elkon, R., Milon, B., Morrison, L., Shah, M., Vijayakumar, S., Racherla, M., Leitch, C.C., Silipino, L., Hadi, S., Weiss-Gayet, M., Barras, E., Schmid, C.D., Ait-Lounis, A., Barnes, A., Song, Y., Eisenman, D.J., Eliyahu, E., Frolenkov, G.I., Strome, S.E., Durand, B., Zaghloul, N.A., Jones, S.M., Reith, W., Hertzano, R. (2015) RFX transcription factors are essential for hearing in mice. Nature communications. 6:8549

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