Gene

larp6b

ID
ZDB-GENE-041008-244
Name
La ribonucleoprotein 6, translational regulator b
Symbol
larp6b Nomenclature History
Previous Names
  • im:7142825
  • wu:fa55b04
  • zgc:162969 (1)
Type
protein_coding_gene
Location
Chr: 11 Mapping Details/Browsers
Description
Predicted to enable mRNA binding activity. Predicted to act upstream of or within RNA processing. Predicted to be part of ribonucleoprotein complex. Predicted to be active in nucleus. Orthologous to human LARP6 (La ribonucleoprotein 6, translational regulator).
Genome Resources
Note
None
Comparative Information
Expression
All Expression Data
2 figures from 2 publications
Cross-Species Comparison
High Throughput Data
Thisse Expression Data
Wild Type Expression Summary
Phenotype
All Phenotype Data
1 Figure from Hau et al., 2020
Cross-Species Comparison
Alliance
Phenotype Summary
Mutations
Mutants
Allele Type Localization Consequence Mutagen Supplier
kg153Allele with one insertionUnknownUnknownTALEN
sa13430Allele with one point mutationUnknownPremature StopENU
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Sequence Targeting Reagents
Targeting Reagent Created Alleles Citations
TALEN1-larp6bHau et al., 2020
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Human Disease
Associated With larp6b Human Ortholog
No data available
Associated With larp6b Via Experimental Models
No data available
Gene Ontology
Protein Domains
Domain, Family, and Site Summary
Type InterPro ID Name
Domain IPR006630 La-type HTH domain
Domain IPR024642 SUZ-C domain
Family IPR002344 Lupus La protein
Family IPR045180 La domain containing protein
Homologous_superfamily IPR036388 Winged helix-like DNA-binding domain superfamily
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Domain Details Per Protein
Protein Additional Resources Length La domain containing protein La-type HTH domain Lupus La protein SUZ-C domain Winged helix DNA-binding domain superfamily Winged helix-like DNA-binding domain superfamily
UniProtKB:A3KP60 InterPro 471
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Transcripts
Genome Browsers
Genome Build: GRCz11Chromosome: 11
Type Name Annotation Method Has Havana Data Length (nt) Analysis
mRNA larp6b-201 (1) Ensembl 1,667 nt
mRNA larp6b-202 (1) Ensembl 849 nt
mRNA larp6b-203 (1) Ensembl 539 nt
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Interactions and Pathways
No data available
Antibodies
No data available
Plasmids
No data available
Constructs
No data available
Marker Relationships
Relationship Marker Type Marker Accession Numbers Citations
Contained inBACCH73-204M7ZFIN Curated Data
EncodesESTfa55b04
EncodesESTIMAGE:7142825Thisse et al., 2004
EncodescDNAMGC:162969ZFIN Curated Data
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Sequences
Orthology
Comparative Orthology
Alliance
Gene Tree
Ensembl
Species Symbol Chromosome Accession # Evidence
HumanLARP615
Amino acid sequence comparison (1)
Citations
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