Gene

usp28

ID
ZDB-GENE-041008-142
Name
ubiquitin specific peptidase 28
Symbol
usp28 Nomenclature History
Previous Names
  • im:7138195
Type
protein_coding_gene
Location
Chr: 21 Mapping Details/Browsers
Description
Predicted to enable cysteine-type deubiquitinase activity. Acts upstream of or within central nervous system morphogenesis. Predicted to be active in cytosol and nucleus. Orthologous to human USP28 (ubiquitin specific peptidase 28).
Genome Resources
Note
None
Comparative Information
Expression
All Expression Data
1 figure from Thisse et al., 2004
Cross-Species Comparison
High Throughput Data
Thisse Expression Data
Wild Type Expression Summary
Phenotype
All Phenotype Data
1 Figure from Tse et al., 2009
Cross-Species Comparison
Alliance
Phenotype Summary
Mutations
Mutants
Sequence Targeting Reagents
Human Disease
Associated With usp28 Human Ortholog
No data available
Associated With usp28 Via Experimental Models
No data available
Gene Ontology
Protein Domains
Domain, Family, and Site Summary
Type InterPro ID Name
Conserved_site IPR018200 Ubiquitin specific protease, conserved site
Conserved_site IPR054108 Ubiquitin carboxyl-terminal hydrolase 25/28, UIM
Domain IPR001394 Peptidase C19, ubiquitin carboxyl-terminal hydrolase
Domain IPR054109 UBA-like domain
Family IPR050164 Ubiquitin carboxyl-terminal hydrolases
1 - 5 of 7 Show all
Domain Details Per Protein
Protein Additional Resources Length Papain-like cysteine peptidase superfamily Peptidase C19, ubiquitin carboxyl-terminal hydrolase UBA-like domain UBA-like superfamily Ubiquitin carboxyl-terminal hydrolase 25/28, UIM Ubiquitin carboxyl-terminal hydrolases Ubiquitin specific protease, conserved site
UniProtKB:A0A8M9PR33 InterPro 1159
UniProtKB:A0A8M1QHC1 InterPro 1163
UniProtKB:A0A8M9P3R8 InterPro 1138
1 - 3 of 3
Transcripts
Genome Browsers
Type Name Annotation Method Has Havana Data Length (nt) Analysis
mRNA usp28-201 (1)
Ensembl
Ensembl 4,785 nt
ZFIN BLAST
mRNA usp28-202 (1)
Ensembl
Ensembl 3,653 nt
ZFIN BLAST
mRNA usp28-203 (1)
Ensembl
Ensembl 4,821 nt
ZFIN BLAST
mRNA usp28-204 (1)
Ensembl
Ensembl 4,893 nt
ZFIN BLAST
1 - 4 of 4
Interactions and Pathways
No data available
Antibodies
No data available
Plasmids
No data available
Constructs
Marker Relationships
Relationship Marker Type Marker Accession Numbers Citations
Contained inBACDKEYP-14B8
EncodesESTIMAGE:7138195Thisse et al., 2004
1 - 2 of 2
Show
Sequences
Type Accession # Sequence Length (nt/aa) Analysis
RNARefSeq:XM_001920061 (1)4043 nt
ZFIN BLASTNCBI BLASTEnsemblUCSC BLAT
GenomicGenBank:BX296544 (1)121579 nt
MegaBLASTEnsembl
PolypeptideUniProtKB:A0A8M1QHC1 (1)1163 aa
ZFIN BLASTSIB BLASTEnsembl Protein Blast
Orthology
Comparative Orthology
Alliance
Gene Tree
Ensembl
Citations
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