Gene

snrpd2

ID
ZDB-GENE-040914-10
Name
small nuclear ribonucleoprotein D2 polypeptide
Symbol
snrpd2 Nomenclature History
Previous Names
  • im:6908977
  • si:dkey-113g17.2 (1)
  • zgc:110732 (1)
Type
protein_coding_gene
Location
Chr: 18 Mapping Details/Browsers
Description
Predicted to be involved in mRNA splicing, via spliceosome. Predicted to be located in cytosol and nucleus. Predicted to be part of U12-type spliceosomal complex and spliceosomal snRNP complex. Human ortholog(s) of this gene implicated in systemic lupus erythematosus. Orthologous to human SNRPD2 (small nuclear ribonucleoprotein D2 polypeptide).
Genome Resources
Note
None
Comparative Information
Expression
All Expression Data
3 figures from 3 publications
Cross-Species Comparison
High Throughput Data
Thisse Expression Data
Wild Type Expression Summary
Phenotype
All Phenotype Data
No data available
Cross-Species Comparison
Alliance
Phenotype Summary
Mutations
Mutants
No data available
Sequence Targeting Reagents
No data available
Human Disease
Associated With snrpd2 Human Ortholog
No data available
Associated With snrpd2 Via Experimental Models
No data available
Gene Ontology
Protein Domains
Domain, Family, and Site Summary
Type InterPro ID Name
Domain IPR001163 Sm domain, eukaryotic/archaea-type
Domain IPR047575 Sm domain
Family IPR027248 Small nuclear ribonucleoprotein Sm D2
Homologous_superfamily IPR010920 LSM domain superfamily
1 - 4 of 4
Domain Details Per Protein
Protein Additional Resources Length LSM domain superfamily Small nuclear ribonucleoprotein Sm D2 Sm domain Sm domain, eukaryotic/archaea-type
UniProtKB:Q567V5 InterPro 118
1 - 1 of 1
Transcripts
Genome Browsers
Genome Build: GRCz11Chromosome: 18
Type Name Annotation Method Has Havana Data Length (nt) Analysis
mRNA snrpd2-201 (1) Ensembl 745 nt
1 - 1 of 1
Interactions and Pathways
No data available
Antibodies
No data available
Plasmids
No data available
Constructs
No data available
Marker Relationships
Relationship Marker Type Marker Accession Numbers Citations
Contained inBACCH211-202C21ZFIN Curated Data
Contained inBACDKEY-113G17ZFIN Curated Data
EncodesESTIMAGE:6908977Thisse et al., 2004
EncodescDNAMGC:110732ZFIN Curated Data
1 - 4 of 4
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Sequences
Orthology
Comparative Orthology
Alliance
Gene Tree
Ensembl
Species Symbol Chromosome Accession # Evidence
HumanSNRPD219
Conserved genome location (synteny) (2)
Amino acid sequence comparison (2)
MouseSnrpd27
Amino acid sequence comparison (1)
Conserved genome location (synteny) (1)
Citations
1 - 5 of 5
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