Gene

xrcc1

ID
ZDB-GENE-040822-30
Name
X-ray repair complementing defective repair in Chinese hamster cells 1
Symbol
xrcc1 Nomenclature History
Previous Names
  • zgc:91996
Type
protein_coding_gene
Location
Chr: 16 Mapping Details/Browsers
Description
Predicted to enable damaged DNA binding activity. Predicted to be involved in base-excision repair. Predicted to act upstream of or within double-strand break repair via nonhomologous end joining and single strand break repair. Predicted to be located in chromosome. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in several diseases, including carcinoma (multiple); central nervous system cancer (multiple); gastrointestinal system cancer (multiple); hematologic cancer (multiple); and liver disease (multiple). Orthologous to human XRCC1 (X-ray repair cross complementing 1).
Genome Resources
Note
None
Comparative Information
Expression
All Expression Data
2 figures from Thisse et al., 2004
Cross-Species Comparison
High Throughput Data
Thisse Expression Data
Wild Type Expression Summary
Phenotype
All Phenotype Data
No data available
Cross-Species Comparison
Alliance
Phenotype Summary
Mutations
Mutants
Allele Type Localization Consequence Mutagen Supplier
kh57Allele with one delinsUnknownFrameshiftCRISPR
kh58Allele with one deletionUnknownFrameshiftCRISPR
kh59Allele with one delinsUnknownFrameshiftCRISPR
kh60Allele with one delinsUnknownFrameshiftCRISPR
kh61Allele with one deletionUnknownInframe DeletionCRISPR
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Sequence Targeting Reagents
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Human Disease
Associated With xrcc1 Human Ortholog
Disease Ontology Term Multi-Species Data OMIM Term OMIM Phenotype ID
autosomal recessive spinocerebellar ataxia 26 Alliance ?Spinocerebellar ataxia, autosomal recessive 26 617633
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Associated With xrcc1 Via Experimental Models
No data available
Gene Ontology
Protein Domains
Domain, Family, and Site Summary
Type InterPro ID Name
Domain IPR001357 BRCT domain
Domain IPR002706 DNA-repair protein Xrcc1, N-terminal
Domain IPR045080 XRCC1, first (central) BRCT domain
Homologous_superfamily IPR008979 Galactose-binding-like domain superfamily
Homologous_superfamily IPR036420 BRCT domain superfamily
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Domain Details Per Protein
Protein Additional Resources Length BRCT domain BRCT domain superfamily DNA-repair protein Xrcc1, N-terminal Galactose-binding-like domain superfamily XRCC1, first (central) BRCT domain
UniProtKB:Q68EG6 InterPro 615
UniProtKB:F1QXI2 InterPro 617
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Transcripts
Genome Browsers
Genome Build: GRCz11Chromosome: 16
Type Name Annotation Method Has Havana Data Length (nt) Analysis
mRNA xrcc1-201 (1) Ensembl 2,797 nt
mRNA xrcc1-202 (1) Ensembl 4,759 nt
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Interactions and Pathways
No data available
Antibodies
No data available
Plasmids
No data available
Constructs
No data available
Marker Relationships
Relationship Marker Type Marker Accession Numbers Citations
Contained inFosmidCH1073-386E10ZFIN Curated Data
Contained inFosmidCH1073-439N16ZFIN Curated Data
EncodesESTIMAGE:7159381Thisse et al., 2004
EncodescDNAMGC:91996ZFIN Curated Data
EncodescDNAMGC:192862ZFIN Curated Data
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Sequences
Orthology
Comparative Orthology
Alliance
Gene Tree
Ensembl
Species Symbol Chromosome Accession # Evidence
HumanXRCC119
Conserved genome location (synteny) (1)
Amino acid sequence comparison (1)
MouseXrcc17
Conserved genome location (synteny) (1)
Amino acid sequence comparison (1)
Citations
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