ZFIN is now using GRCz12tu for Genomic Data
Gene
lysmd2
- ID
- ZDB-GENE-040801-250
- Name
- LysM, putative peptidoglycan-binding, domain containing 2
- Symbol
- lysmd2 Nomenclature History
- Previous Names
-
- zgc:91941
- Type
- protein_coding_gene
- Location
- Chr: 18 Mapping Details/Browsers
- Genome Assembly
- GRCz12tu
- Annotation Status
- Current
- Description
- Is expressed in central nervous system; hypophysis; notochord; and pancreas primordium. Orthologous to human LYSMD2 (LysM domain containing 2).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- 7 figures from 2 publications
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
-
- MGC:91941 (9 images)
Wild Type Expression Summary
- All Phenotype Data
- No data available
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
No data available
Human Disease
Domain, Family, and Site Summary
Domain Details Per Protein
| Protein | Additional Resources | Length | LysM and putative peptidoglycan-binding domain-containing protein 1-4 | LysM domain | LysM domain superfamily |
|---|---|---|---|---|---|
| UniProtKB:Q6DEF4 | InterPro | 208 |
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| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| mRNA |
lysmd2-201
(1)
|
Ensembl | 1,380 nt | ||
| mRNA |
lysmd2-202
(1)
|
Ensembl | 1,045 nt | ||
| mRNA |
lysmd2-203
(1)
|
Ensembl | 885 nt |
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Interactions and Pathways
No data available
Plasmids
No data available
No data available
| Relationship | Marker Type | Marker | Accession Numbers | Citations |
|---|---|---|---|---|
| Contained in | BAC | CH211-12A1 | ZFIN Curated Data | |
| Encodes | cDNA | MGC:91941 | ZFIN Curated Data |
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| Type | Accession # | Genome Assembly | Length (nt/aa) | Analysis |
|---|---|---|---|---|
| RNA | RefSeq:NM_001003507 (1) | 1400 nt | ||
| Genomic | GenBank:BX927313 (1) | 189797 nt | ||
| Polypeptide | UniProtKB:Q6DEF4 (1) | 208 aa |
- Yokoyama, C.C., Baldridge, M.T., Leung, D.W., Zhao, G., Desai, C., Liu, T.C., Diaz-Ochoa, V.E., Huynh, J.P., Kimmey, J.M., Sennott, E.L., Hole, C.R., Idol, R.A., Park, S., Storek, K.M., Wang, C., Hwang, S., Milam, A.V., Chen, E., Kerrinnes, T., Starnbach, M.N., Handley, S.A., Mysorekar, I.U., Allen, P.M., Monack, D.M., Dinauer, M.C., Doering, T.L., Tsolis, R.M., Dworkin, J.E., Stallings, C.L., Amarasinghe, G.K., Micchelli, C.A., Virgin, H.W. (2018) LysMD3 is a type II membrane protein without an in vivo role in the response to a range of pathogens.. The Journal of biological chemistry. 293(16):6022-6038
- Sullivan, C., Lage, C.R., Yoder, J.A., Postlethwait, J.H., Kim, C.H. (2017) Evolutionary divergence of the vertebrate TNFAIP8 gene family: Applying the spotted gar orthology bridge to understand ohnolog loss in teleosts. PLoS One. 12:e0179517
- Laroche, F.J., Tulotta, C., Lamers, G.E., Meijer, A.H., Yang, P., Verbeek, F.J., Blaise, M., Stougaard, J., and Spaink, H.P. (2013) The embryonic expression patterns of zebrafish genes encoding LysM-domains. Gene expression patterns : GEP. 13(7):212-24
- Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J., and Marra,M.A. (2002) Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Proceedings of the National Academy of Sciences of the United States of America. 99(26):16899-903
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