ZFIN is now using GRCz12tu for Genomic Data
Gene
gapvd1
- ID
- ZDB-GENE-040718-117
- Name
- GTPase activating protein and VPS9 domains 1
- Symbol
- gapvd1 Nomenclature History
- Previous Names
-
- zgc:92666
- Type
- protein_coding_gene
- Location
- Chr: 8 Mapping Details/Browsers
- Genome Assembly
- GRCz12tu
- Annotation Status
- Current
- Description
- Predicted to enable guanyl-nucleotide exchange factor activity and small GTPase binding activity. Predicted to be involved in regulation of transport and vesicle-mediated transport. Predicted to be located in endosome and membrane. Predicted to be active in cytosol and endocytic vesicle. Orthologous to human GAPVD1 (GTPase activating protein and VPS9 domains 1).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- No data available
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
- No data available
Wild Type Expression Summary
- All Phenotype Data
- No data available
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
Human Disease
Domain, Family, and Site Summary
| Type | InterPro ID | Name |
|---|---|---|
| Domain | IPR001936 | Ras GTPase-activating domain |
| Domain | IPR003123 | VPS9 domain |
| Domain | IPR041545 | RABX5, catalytic core helical domain |
| Family | IPR045046 | Vacuolar protein sorting-associated protein 9-like |
| Homologous_superfamily | IPR008936 | Rho GTPase activation protein |
| Homologous_superfamily | IPR037191 | VPS9 domain superfamily |
Domain Details Per Protein
| Protein | Additional Resources | Length | RABX5, catalytic core helical domain | Ras GTPase-activating domain | Rho GTPase activation protein | Vacuolar protein sorting-associated protein 9-like | VPS9 domain | VPS9 domain superfamily |
|---|---|---|---|---|---|---|---|---|
| UniProtKB:A0A8M3AVA8 | InterPro | 1456 | ||||||
| UniProtKB:A0A8M3B237 | InterPro | 1484 | ||||||
| UniProtKB:A0A8M3BBW9 | InterPro | 1457 | ||||||
| UniProtKB:A0A8M3AVB1 | InterPro | 1483 | ||||||
| UniProtKB:E7F237 | InterPro | 1445 | ||||||
| UniProtKB:A0A2R8Q516 | InterPro | 1473 | ||||||
| UniProtKB:A0AB32TU59 | InterPro | 1446 | ||||||
| UniProtKB:A0AC58G6R4 | InterPro | 1472 |
- Genome Browsers
| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| mRNA |
gapvd1-201
(1)
|
Ensembl | 5,128 nt | ||
| mRNA |
gapvd1-202
(1)
|
Ensembl | 1,789 nt | ||
| mRNA |
gapvd1-203
(1)
|
Ensembl | 5,067 nt | ||
| mRNA |
gapvd1-204
(1)
|
Ensembl | 4,442 nt | ||
| mRNA |
gapvd1-205
(1)
|
Ensembl | 4,289 nt | ||
| mRNA |
gapvd1-206
(1)
|
Ensembl | 4,283 nt |
Interactions and Pathways
No data available
Plasmids
No data available
- Genome Browsers