Gene

capn1a

ID
ZDB-GENE-040426-1263
Name
calpain 1, (mu/I) large subunit a
Symbol
capn1a Nomenclature History
Previous Names
  • capn1
  • zgc:63788
Type
protein_coding_gene
Location
Chr: 13 Mapping Details/Browsers
Description
Predicted to enable calcium-dependent cysteine-type endopeptidase activity. Acts upstream of or within brain development and branchiomotor neuron axon guidance. Predicted to be active in cytoplasm. Is expressed in brain. Human ortholog(s) of this gene implicated in hereditary spastic paraplegia 76. Orthologous to several human genes including CAPN11 (calpain 11).
Genome Resources
Note
None
Comparative Information
Expression
All Expression Data
7 figures from 4 publications
Cross-Species Comparison
High Throughput Data
Thisse Expression Data
Wild Type Expression Summary
Phenotype
All Phenotype Data
3 figures from Gan-Or et al., 2016
Cross-Species Comparison
Alliance
Phenotype Summary
Mutations
Mutants
Sequence Targeting Reagents
Human Disease
Associated With capn1a Human Ortholog
Disease Ontology Term Multi-Species Data OMIM Term OMIM Phenotype ID
hereditary spastic paraplegia 76 Alliance Spastic paraplegia 76, autosomal recessive 616907
Associated With capn1a Via Experimental Models
No data available
Gene Ontology
Protein Domains
Domain, Family, and Site Summary
Type InterPro ID Name
Active_site IPR000169 Cysteine peptidase, cysteine active site
Binding_site IPR018247 EF-Hand 1, calcium-binding site
Domain IPR001300 Peptidase C2, calpain, catalytic domain
Domain IPR002048 EF-hand domain
Domain IPR022682 Peptidase C2, calpain, large subunit, domain III
Domain IPR022683 Peptidase C2, calpain, domain III
Domain IPR033883 Calpain subdomain III
Family IPR022684 Peptidase C2, calpain family
Homologous_superfamily IPR011992 EF-hand domain pair
Homologous_superfamily IPR036213 Calpain large subunit, domain III superfamily
Homologous_superfamily IPR038765 Papain-like cysteine peptidase superfamily
Domain Details Per Protein
Protein Length Calpain large subunit, domain III superfamily Calpain subdomain III Cysteine peptidase, cysteine active site EF-Hand 1, calcium-binding site EF-hand domain EF-hand domain pair Papain-like cysteine peptidase superfamily Peptidase C2, calpain, catalytic domain Peptidase C2, calpain, domain III Peptidase C2, calpain family Peptidase C2, calpain, large subunit, domain III
UniProtKB:B8A6G0 704
UniProtKB:Q7SYA9 704
Transcripts
Genome Browsers
Interactions and Pathways
No data available
Antibodies
No data available
Plasmids
No data available
Constructs
Marker Relationships
Sequences
Orthology
Comparative Orthology
Alliance
Gene Tree
Ensembl
Citations