ZFIN is now using GRCz12tu for Genomic Data
Gene
rtraf
- ID
- ZDB-GENE-040426-1082
- Name
- RNA transcription, translation and transport factor
- Symbol
- rtraf Nomenclature History
- Previous Names
-
- zgc:56576 (1)
- Type
- protein_coding_gene
- Location
- Chr: 17 Mapping Details/Browsers
- Genome Assembly
- GRCz12tu
- Annotation Status
- Current
- Description
- Predicted to enable RNA binding activity and RNA polymerase II complex binding activity. Predicted to be involved in negative regulation of protein kinase activity; positive regulation of transcription by RNA polymerase II; and tRNA splicing, via endonucleolytic cleavage and ligation. Predicted to be located in microtubule cytoskeleton; nucleus; and perinuclear region of cytoplasm. Predicted to be part of tRNA-splicing ligase complex. Orthologous to human RTRAF (RNA transcription, translation and transport factor).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- 2 figures from 2 publications
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
-
- IMAGE:7143570 (1 image)
Wild Type Expression Summary
- All Phenotype Data
- No data available
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
Human Disease
Domain, Family, and Site Summary
| Type | InterPro ID | Name |
|---|---|---|
| Family | IPR019265 | RNA transcription, translation and transport factor protein |
Domain Details Per Protein
| Protein | Additional Resources | Length | RNA transcription, translation and transport factor protein |
|---|---|---|---|
| UniProtKB:Q7ZUH1 | InterPro | 242 | |
| UniProtKB:F1QKI4 | InterPro | 242 |
- Genome Browsers
| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| mRNA |
rtraf-201
(1)
|
Ensembl | 1,161 nt | ||
| ncRNA |
zgc:56576-002
(1)
|
Ensembl | 958 nt | ||
| ncRNA |
zgc:56576-003
(1)
|
Ensembl | 794 nt | ||
| ncRNA |
zgc:56576-004
(1)
|
Ensembl | 957 nt |
Interactions and Pathways
No data available
Plasmids
No data available
- Genome Browsers