Gene

zhx3a

ID
ZDB-GENE-031002-40
Name
zinc fingers and homeoboxes 3a
Symbol
zhx3a Nomenclature History
Previous Names
  • sb:cb827 (1)
  • si:ch211-232b12.5
Type
protein_coding_gene
Location
Chr: 11 Mapping Details/Browsers
Description
Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Is expressed in alar plate midbrain region; immature eye; nervous system; and pharyngeal arch 3-7 skeleton. Orthologous to human ZHX3 (zinc fingers and homeoboxes 3).
Genome Resources
Note
None
Comparative Information
Expression
All Expression Data
5 figures from Thisse et al., 2001
Cross-Species Comparison
High Throughput Data
Thisse Expression Data
Wild Type Expression Summary
Phenotype
All Phenotype Data
No data available
Cross-Species Comparison
Alliance
Phenotype Summary
Mutations
Mutants
Allele Type Localization Consequence Mutagen Supplier
sa27793Allele with one point mutationUnknownPremature StopENU
sa35088Allele with one point mutationUnknownPremature StopENU
Zebrafish International Resource Center (ZIRC) (order this)
European Zebrafish Resource Center (EZRC) (order this)
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Sequence Targeting Reagents
No data available
Human Disease
Associated With zhx3a Human Ortholog
No data available
Associated With zhx3a Via Experimental Models
No data available
Gene Ontology
Protein Domains
Domain, Family, and Site Summary
Type InterPro ID Name
Domain IPR001356 Homeodomain
Domain IPR041057 ZHX, C2H2 finger domain
Homologous_superfamily IPR009057 Homedomain-like superfamily
Homologous_superfamily IPR036236 Zinc finger C2H2 superfamily
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Domain Details Per Protein
Protein Additional Resources Length Homedomain-like superfamily Homeodomain ZHX, C2H2 finger domain Zinc finger C2H2 superfamily
UniProtKB:A0A8M1RM49 InterPro 981
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Transcripts
Genome Browsers
Genome Build: GRCz11Chromosome: 11
Type Name Annotation Method Has Havana Data Length (nt) Analysis
mRNA si:ch211-232b12.5-201 (1)
Ensembl
Ensembl 4,586 nt
ZFIN BLAST
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Interactions and Pathways
No data available
Antibodies
No data available
Plasmids
No data available
Constructs
No data available
Marker Relationships
Relationship Marker Type Marker Accession Numbers Citations
Contained inBACCH211-232B12ZFIN Curated Data
EncodesESTcb827Thisse et al., 2001
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Sequences
Type Accession # Sequence Length (nt/aa) Analysis
RNARefSeq:XM_002663787 (1)5365 nt
ZFIN BLASTNCBI BLASTEnsemblUCSC BLAT
GenomicGenBank:CR548630 (1)117408 nt
MegaBLASTEnsembl
PolypeptideUniProtKB:A0A8M1RM49 (1)981 aa
ZFIN BLASTSIB BLASTEnsembl Protein Blast
Orthology
Comparative Orthology
Alliance
No data available
Citations
TSV
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