ZFIN is now using GRCz12tu for Genomic Data
Gene
slc31a2
- ID
- ZDB-GENE-030925-25
- Name
- solute carrier family 31 member 2
- Symbol
- slc31a2 Nomenclature History
- Previous Names
- Type
- protein_coding_gene
- Location
- Chr: 21 Mapping Details/Browsers
- Genome Assembly
- GRCz12tu
- Annotation Status
- Current
- Description
- Predicted to enable copper ion transmembrane transporter activity. Predicted to be located in late endosome membrane. Is expressed in hatching gland and polster. Orthologous to human SLC31A2 (solute carrier family 31 member 2).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- 5 figures from Thisse et al., 2001
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
-
- cb797 (5 images)
Wild Type Expression Summary
- All Phenotype Data
- No data available
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
No data available
No data available
Human Disease
Domain, Family, and Site Summary
| Type | InterPro ID | Name |
|---|---|---|
| Family | IPR007274 | Ctr copper transporter |
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Domain Details Per Protein
| Protein | Additional Resources | Length | Ctr copper transporter |
|---|---|---|---|
| UniProtKB:A0A8M3B4K8 | InterPro | 171 | |
| UniProtKB:A0A8M3AM17 | InterPro | 169 | |
| UniProtKB:E9QC64 | InterPro | 171 |
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| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| aberrant processed transcript |
slc31a2-201
(1)
|
Ensembl | 860 nt | ||
| mRNA |
slc31a2-202
(1)
|
Ensembl | 1,459 nt | ||
| mRNA |
slc31a2-203
(1)
|
Ensembl | 868 nt | ||
| ncRNA |
slc31a2-003
(1)
|
Ensembl | 868 nt |
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Interactions and Pathways
No data available
Plasmids
No data available
No data available
| Relationship | Marker Type | Marker | Accession Numbers | Citations |
|---|---|---|---|---|
| Contained in | BAC | CH73-341M15 | ZFIN Curated Data | |
| Contained in | BAC | CH211-282J22 | ZFIN Curated Data | |
| Contains | STS | chunp30121 | ||
| Encodes | EST | cb797 | Thisse et al., 2001 |
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| Type | Accession # | Genome Assembly | Length (nt/aa) | Analysis |
|---|---|---|---|---|
| RNA | RefSeq:NM_001198749 (1) | 1471 nt | ||
| Genomic | GenBank:FP085417 (1) | 109585 nt | ||
| Polypeptide | UniProtKB:A0A8M3B4K8 (1) | 171 aa |
- Foulkes, M.J., Henry, K.M., Rougeot, J., Hooper-Greenhill, E., Loynes, C.A., Jeffrey, P., Fleming, A., Savage, C.O., Meijer, A.H., Jones, S., Renshaw, S.A. (2017) Expression and regulation of drug transporters in vertebrate neutrophils. Scientific Reports. 7:4967
- Elkon, R., Milon, B., Morrison, L., Shah, M., Vijayakumar, S., Racherla, M., Leitch, C.C., Silipino, L., Hadi, S., Weiss-Gayet, M., Barras, E., Schmid, C.D., Ait-Lounis, A., Barnes, A., Song, Y., Eisenman, D.J., Eliyahu, E., Frolenkov, G.I., Strome, S.E., Durand, B., Zaghloul, N.A., Jones, S.M., Reith, W., Hertzano, R. (2015) RFX transcription factors are essential for hearing in mice. Nature communications. 6:8549
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