Gene

pms1

ID
ZDB-GENE-030616-528
Name
PMS1 homolog 1, mismatch repair system component
Symbol
pms1 Nomenclature History
Previous Names
  • si:dz164h20.2
  • si:dz72b14.2
Type
protein_coding_gene
Location
Chr: 9 Mapping Details/Browsers
Description
Predicted to enable ATP hydrolysis activity. Predicted to be involved in mismatch repair. Predicted to act upstream of or within DNA damage response. Predicted to be located in nucleus. Predicted to be part of MutLalpha complex. Human ortholog(s) of this gene implicated in Lynch syndrome; dermatomyositis; pancreatic ductal carcinoma; and polymyositis. Orthologous to human PMS1 (PMS1 homolog 1, mismatch repair system component).
Genome Resources
Note
None
Comparative Information
Expression
All Expression Data
1 figure from Thisse et al., 2004
Cross-Species Comparison
High Throughput Data
Thisse Expression Data
Wild Type Expression Summary
Phenotype
All Phenotype Data
No data available
Cross-Species Comparison
Alliance
Phenotype Summary
Mutations
Mutants
No data available
Sequence Targeting Reagents
No data available
Human Disease
Associated With pms1 Human Ortholog
No data available
Associated With pms1 Via Experimental Models
No data available
Gene Ontology
Protein Domains
Domain, Family, and Site Summary
Type InterPro ID Name
Conserved_site IPR014762 DNA mismatch repair, conserved site
Domain IPR009071 High mobility group box domain
Domain IPR013507 DNA mismatch repair protein, S5 domain 2-like
Family IPR002099 DNA mismatch repair protein MutL/Mlh/PMS
Family IPR038973 DNA mismatch repair protein MutL/Mlh/Pms-like
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Domain Details Per Protein
Protein Additional Resources Length DNA mismatch repair, conserved site DNA mismatch repair protein MutL/Mlh/PMS DNA mismatch repair protein MutL/Mlh/Pms-like DNA mismatch repair protein, S5 domain 2-like High mobility group box domain High mobility group box domain superfamily Histidine kinase/HSP90-like ATPase superfamily Ribosomal protein uS5 domain 2-type superfamily Small ribosomal subunit protein uS5 domain 2-type fold, subgroup
UniProtKB:Q8JFR9 InterPro 896
UniProtKB:A0AB32TWV9 InterPro 896
UniProtKB:A0AB32TXT7 InterPro 736
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Transcripts
Genome Browsers
Genome Build: GRCz11Chromosome: 9
Type Name Annotation Method Has Havana Data Length (nt) Analysis
mRNA ottdart00000001858 (1) Havana 117 nt
mRNA ottdart00000003997 (1) Havana 659 nt
mRNA pms1-201 (1) Ensembl 2,929 nt
mRNA pms1-202 (1) Ensembl 2,862 nt
mRNA pms1-203 (1) Ensembl 2,649 nt
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Interactions and Pathways
No data available
Antibodies
No data available
Plasmids
No data available
Constructs
No data available
Marker Relationships
Relationship Marker Type Marker Accession Numbers Citations
Contained inBACCH211-3O3ZFIN Curated Data
Contained inBACDKEY-204G5ZFIN Curated Data
Contained inPACBUSM1-72B14ZFIN Curated Data
Contained inPACBUSM1-164H20
Contained inPACBUSM1-211O13ZFIN Curated Data
EncodescDNAMGC:66424ZFIN Curated Data
Has ArtifactcDNAMGC:165433ZFIN Curated Data
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Sequences
Orthology
Comparative Orthology
Alliance
Gene Tree
Ensembl
Species Symbol Chromosome Accession # Evidence
HumanPMS12
Amino acid sequence comparison (1)
Conserved genome location (synteny) (1)
MousePms11
Amino acid sequence comparison (1)
Conserved genome location (synteny) (1)
Citations
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