ZFIN is now using GRCz12tu for Genomic Data
Gene
slc39a13
- ID
- ZDB-GENE-030616-17
- Name
- solute carrier family 39 member 13
- Symbol
- slc39a13 Nomenclature History
- Previous Names
-
- ZIP13 (1)
- si:by184l24.1
- si:xx-184l24.1
- wu:fa55a07
- zgc:136440
- Type
- protein_coding_gene
- Location
- Chr: 7 Mapping Details/Browsers
- Genome Assembly
- GRCz12tu
- Annotation Status
- Current
- Description
- Predicted to enable zinc ion transmembrane transporter activity. Predicted to be involved in intracellular zinc ion homeostasis and zinc ion transmembrane transport. Predicted to act upstream of or within metal ion transport and transmembrane transport. Predicted to be located in cytoplasmic vesicle membrane. Human ortholog(s) of this gene implicated in Ehlers-Danlos syndrome and Ehlers-Danlos syndrome spondylodysplastic type 3. Orthologous to human SLC39A13 (solute carrier family 39 member 13).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- 3 figures from 3 publications
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
- No data available
Wild Type Expression Summary
- All Phenotype Data
- No data available
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
Human Disease
| Disease Ontology Term | Multi-Species Data | OMIM Term | OMIM Phenotype ID |
|---|---|---|---|
| Ehlers-Danlos syndrome spondylodysplastic type 3 | Alliance | Ehlers-Danlos syndrome, spondylodysplastic type, 3 | 612350 |
Domain, Family, and Site Summary
| Type | InterPro ID | Name |
|---|---|---|
| Family | IPR003689 | Zinc/iron permease |
Domain Details Per Protein
| Protein | Additional Resources | Length | Zinc/iron permease |
|---|---|---|---|
| UniProtKB:F1R7I6 | InterPro | 389 | |
| UniProtKB:Q8AW42 | InterPro | 348 | |
| UniProtKB:B3DG64 | InterPro | 348 |
- Genome Browsers
| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| mRNA |
slc39a13-201
(1)
|
Ensembl | 3,061 nt | ||
| mRNA |
slc39a13-202
(1)
|
Ensembl | 1,206 nt |
Interactions and Pathways
No data available
Plasmids
No data available
- Genome Browsers