Gene

ptbp1b

ID
ZDB-GENE-030131-9796
Name
polypyrimidine tract binding protein 1b
Symbol
ptbp1b Nomenclature History
Previous Names
  • cb363 (1)
  • id:ibd2901
  • im:7145323
  • sb:cb363 (1)
  • si:ch211-262i1.1
  • wu:fa04b05
  • wu:fb16f08
  • wu:fc58e03
Type
protein_coding_gene
Location
Chr: 11 Mapping Details/Browsers
Description
Predicted to enable mRNA binding activity. Predicted to be involved in regulation of RNA splicing and regulation of cell differentiation. Predicted to be active in nucleus. Is expressed in several structures, including EVL; axis; mesoderm; nervous system; and pronephric duct. Orthologous to human PTBP1 (polypyrimidine tract binding protein 1).
Genome Resources
Note
None
Comparative Information
Expression
All Expression Data
16 figures from 4 publications
Cross-Species Comparison
High Throughput Data
Thisse Expression Data
Wild Type Expression Summary
Phenotype
All Phenotype Data
No data available
Cross-Species Comparison
Alliance
Phenotype Summary
Mutations
Mutants
Allele Type Localization Consequence Mutagen Supplier
sa21870Allele with one point mutationUnknownSplice SiteENU
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Sequence Targeting Reagents
No data available
Human Disease
Associated With ptbp1b Human Ortholog
No data available
Associated With ptbp1b Via Experimental Models
No data available
Gene Ontology
Protein Domains
Domain, Family, and Site Summary
Type InterPro ID Name
Domain IPR000504 RNA recognition motif domain
Domain IPR021790 PTBP1-like, RNA recognition motif 2
Domain IPR035000 PTBP1, RNA recognition motif 1
Family IPR006536 HnRNP-L/PTB
Homologous_superfamily IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
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Domain Details Per Protein
Protein Additional Resources Length HnRNP-L/PTB Nucleotide-binding alpha-beta plait domain superfamily PTBP1-like, RNA recognition motif 2 PTBP1, RNA recognition motif 1 RNA-binding domain superfamily RNA recognition motif domain
UniProtKB:A0A8M2B222 InterPro 547
UniProtKB:A0A8M3BDK1 InterPro 518
UniProtKB:F1QKG2 InterPro 564
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Transcripts
Genome Browsers
Genome Build: GRCz11Chromosome: 11
Type Name Annotation Method Has Havana Data Length (nt) Analysis
aberrant processed transcript ptbp1b-205 (1) Ensembl 824 nt
mRNA ptbp1b-201 (1) Ensembl 3,619 nt
mRNA ptbp1b-202 (1) Ensembl 311 nt
mRNA ptbp1b-203 (1) Ensembl 341 nt
mRNA ptbp1b-206 (1) Ensembl 765 nt
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Interactions and Pathways
No data available
Antibodies
No data available
Plasmids
No data available
Constructs
No data available
Marker Relationships
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Sequences
Orthology
Comparative Orthology
Alliance
Gene Tree
Ensembl
Species Symbol Chromosome Accession # Evidence
HumanPTBP119
Conserved genome location (synteny) (2)
Amino acid sequence comparison (2)
MousePtbp110
Amino acid sequence comparison (1)
Conserved genome location (synteny) (1)
Citations