ZFIN is now using GRCz12tu for Genomic Data
Gene
thumpd3
- ID
- ZDB-GENE-030131-9745
- Name
- THUMP domain containing 3
- Symbol
- thumpd3 Nomenclature History
- Previous Names
- Type
- protein_coding_gene
- Location
- Chr: 6 Mapping Details/Browsers
- Genome Assembly
- GRCz12tu
- Annotation Status
- Current
- Description
- Predicted to enable tRNA (guanine) methyltransferase activity. Predicted to be involved in tRNA methylation. Is expressed in several structures, including alar plate midbrain region; immature eye; mesoderm; musculature system; and nervous system. Orthologous to human THUMPD3 (THUMP domain 3 tRNA guanosine methyltransferase).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- 6 figures from Thisse et al., 2001
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
-
- cb255 (14 images)
Wild Type Expression Summary
- All Phenotype Data
- No data available
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
Human Disease
Domain, Family, and Site Summary
| Type | InterPro ID | Name |
|---|---|---|
| Conserved_site | IPR053943 | Ribosomal RNA large subunit methyltransferase K/L-like, conserved site |
| Domain | IPR000241 | Ribosomal RNA large subunit methyltransferase K/L-like, methyltransferase domain |
| Domain | IPR004114 | THUMP domain |
| Homologous_superfamily | IPR029063 | S-adenosyl-L-methionine-dependent methyltransferase superfamily |
Domain Details Per Protein
| Protein | Additional Resources | Length | Ribosomal RNA large subunit methyltransferase K/L-like, conserved site | Ribosomal RNA large subunit methyltransferase K/L-like, methyltransferase domain | S-adenosyl-L-methionine-dependent methyltransferase superfamily | THUMP domain |
|---|---|---|---|---|---|---|
| UniProtKB:A3KP95 | InterPro | 477 | ||||
| UniProtKB:E9QJ61 | InterPro | 482 | ||||
| UniProtKB:A0AC58JRQ4 | InterPro | 447 | ||||
| UniProtKB:A0AC58JRQ9 | InterPro | 482 | ||||
| UniProtKB:A0AC58JRR1 | InterPro | 425 |
- Genome Browsers
| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| mRNA |
thumpd3-201
(1)
|
Ensembl | 1,619 nt | ||
| mRNA |
thumpd3-202
(1)
|
Ensembl | 2,258 nt | ||
| mRNA |
thumpd3-203
(1)
|
Ensembl | 1,619 nt | ||
| mRNA |
thumpd3-204
(1)
|
Ensembl | 1,449 nt |
Interactions and Pathways
No data available
Plasmids
No data available
- Genome Browsers