Gene

col5a3a

ID
ZDB-GENE-030131-968
Name
collagen, type V, alpha 3a
Symbol
col5a3a Nomenclature History
Previous Names
  • col11a1
  • col5a3
  • wu:fb54e07
Type
protein_coding_gene
Location
Chr: 3 Mapping Details/Browsers
Description
Predicted to have extracellular matrix structural constituent. Predicted to be involved in extracellular matrix organization. Predicted to localize to collagen type IX trimer; extracellular matrix; and extracellular space. Is expressed in eye; notochord; and pericardium. Orthologous to human COL5A3 (collagen type V alpha 3 chain).
Genome Resources
Note
None
Comparative Information
Expression
All Expression Data
11 figures from 4 publications
Cross-Species Comparison
High Throughput Data
Thisse Expression Data
No data available
Wild Type Expression Summary
Phenotype
All Phenotype Data
No data available
Cross-Species Comparison
Alliance
Phenotype Summary
Mutations
Mutants
Sequence Targeting Reagents
Human Disease
Associated With col5a3a Human Ortholog
No data available
Associated With col5a3a Via Experimental Models
No data available
Gene Ontology
Protein Domains
Domain, Family, and Site Summary
Type InterPro ID Name
Domain IPR000885 Fibrillar collagen, C-terminal
Domain IPR001791 Laminin G domain
Homologous_superfamily IPR013320 Concanavalin A-like lectin/glucanase domain superfamily
Repeat IPR008160 Collagen triple helix repeat
Domain Details Per Protein
Protein Length Collagen triple helix repeat Concanavalin A-like lectin/glucanase domain superfamily Fibrillar collagen, C-terminal Laminin G domain
UniProtKB:A0A8M9PRH8 1738
UniProtKB:D6MUD6 1887
Transcripts
Genome Browsers
Interactions and Pathways
No data available
Antibodies
No data available
Plasmids
No data available
Constructs
Marker Relationships
Sequences
Orthology
Comparative Orthology
Alliance
Gene Tree
Ensembl
Note
Woods, et al. (2000. Genome Res. 10:1902-1914.) name this gene col11a1 and report orthology to human COL11A1. Subsequent analysis suggest this zebrafish gene is the ortholog of human COL5A3.
Citations