Gene
si:ch1073-440b2.1
- ID
- ZDB-GENE-030131-8303
- Name
- si:ch1073-440b2.1
- Symbol
- si:ch1073-440b2.1 Nomenclature History
- Previous Names
-
- fb08c06
- wu:fb08c06 (1)
- Type
- protein_coding_gene
- Location
- Chr: 1 Mapping Details/Browsers
- Description
- Predicted to be located in cytoplasm. Orthologous to human LONRF2 (LON peptidase N-terminal domain and ring finger 2).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- No data available
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
- No data available
Wild Type Expression Summary
- All Phenotype Data
- No data available
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
| Allele | Type | Localization | Consequence | Mutagen | Supplier |
|---|---|---|---|---|---|
| sa25590 | Allele with one point mutation | Unknown | Splice Site | ENU | |
| sa32690 | Allele with one point mutation | Unknown | Premature Stop | ENU | |
| sa32691 | Allele with one point mutation | Unknown | Premature Stop | ENU | |
| sa39626 | Allele with one point mutation | Unknown | Premature Stop | ENU |
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Human Disease
Domain, Family, and Site Summary
Domain Details Per Protein
| Protein | Additional Resources | Length | Immunoglobulin-like domain | Lon protease, N-terminal domain | Lon protease, N-terminal domain superfamily | PUA-like superfamily | Tetratricopeptide-like helical domain superfamily | Zinc finger, RING/FYVE/PHD-type | Zinc finger, RING-type | Zinc finger, RING-type, conserved site | Zinc finger, RING-type, eukaryotic |
|---|---|---|---|---|---|---|---|---|---|---|---|
| UniProtKB:A0A8M1Q1W3 | InterPro | 749 | |||||||||
| UniProtKB:E7EYP4 | InterPro | 488 | |||||||||
| UniProtKB:A0A8M9Q9S3 | InterPro | 749 |
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| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| mRNA |
si:ch1073-440b2.1-201
(1)
|
Ensembl | 2,044 nt | ||
| mRNA |
si:ch1073-440b2.1-202
(1)
|
Ensembl | 1,308 nt |
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Interactions and Pathways
No data available
Plasmids
No data available
No data available
| Relationship | Marker Type | Marker | Accession Numbers | Citations |
|---|---|---|---|---|
| Contained in | BAC | CH73-77J21 | ZFIN Curated Data | |
| Contained in | Fosmid | CH1073-440B2 | ZFIN Curated Data | |
| Encodes | EST | fb08c06 |
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| Type | Accession # | Sequence | Length (nt/aa) | Analysis |
|---|---|---|---|---|
| RNA | RefSeq:XM_021476636 (1) | 5017 nt | ||
| Genomic | GenBank:BX908760 (1) | 188768 nt | ||
| Polypeptide | UniProtKB:A0A8M1Q1W3 (1) | 749 aa |
- Comparative Orthology
- Alliance
No data available
- Sun, Y., Zhang, B., Luo, L., Shi, D.L., Wang, H., Cui, Z., Huang, H., Cao, Y., Shu, X., Zhang, W., Zhou, J., Li, Y., Du, J., Zhao, Q., Chen, J., Zhong, H., Zhong, T.P., Li, L., Xiong, J.W., Peng, J., Xiao, W., Zhang, J., Yao, J., Yin, Z., Mo, X., Peng, G., Zhu, J., Chen, Y., Zhou, Y., Liu, D., Pan, W., Zhang, Y., Ruan, H., Liu, F., Zhu, Z., Meng, A., ZAKOC Consortium (2019) Systematic genome editing of the genes on zebrafish Chromosome 1 by CRISPR/Cas9. Genome research. 30(1):118-26
- Elkon, R., Milon, B., Morrison, L., Shah, M., Vijayakumar, S., Racherla, M., Leitch, C.C., Silipino, L., Hadi, S., Weiss-Gayet, M., Barras, E., Schmid, C.D., Ait-Lounis, A., Barnes, A., Song, Y., Eisenman, D.J., Eliyahu, E., Frolenkov, G.I., Strome, S.E., Durand, B., Zaghloul, N.A., Jones, S.M., Reith, W., Hertzano, R. (2015) RFX transcription factors are essential for hearing in mice. Nature communications. 6:8549
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