Gene

serbp1a

ID

ZDB-GENE-030131-7389

Name

SERPINE1 mRNA binding protein 1a

Symbol

serbp1a Nomenclature History

Previous Names

serbp1
hm:zeh0245
ndufb9
wu:fa12d05
wu:fb36e07
wu:fc16f12
wu:fj13e12
zgc:55489

Type

protein_coding_gene

Location

Chr: 6 Mapping Details/Browsers

Description

Predicted to have mRNA 3'-UTR binding activity. Orthologous to human SERBP1 (SERPINE1 mRNA binding protein 1).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

1 figure from Thisse et al., 2004

Cross-Species Comparison

High Throughput Data

GEO (1)

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Thisse Expression Data

MGC:55489 (1 image)

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With serbp1a Human Ortholog

No data available

Associated With serbp1a Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR006861	Hyaluronan/mRNA-binding protein
Domain	IPR032381	Intracellular hyaluronan-binding protein 4, N-terminal domain
Family	IPR039764	RNA binding protein HABP4/SERBP1-like

Domain Details Per Protein

Protein	Length	Hyaluronan/mRNA-binding protein	Intracellular hyaluronan-binding protein 4, N-terminal domain	RNA binding protein HABP4/SERBP1-like
UniProtKB:F1Q5Q3 InterPro	392
UniProtKB:Q802Z9 InterPro	391

Transcripts

Genome Browsers

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	serbp1a-201 (1) Ensembl	Havana	2344 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
ncRNA	serbp1a-002 (1) Ensembl	Havana	767 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
ncRNA	serbp1a-003 (1) Ensembl	Havana	767 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
ncRNA	serbp1a-004 (1) Ensembl	Havana	790 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
ncRNA	serbp1a-005 (1) Ensembl	Havana	701 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations