Gene
srsf5a
- ID
- ZDB-GENE-030131-7336
- Name
- serine and arginine rich splicing factor 5a
- Symbol
- srsf5a Nomenclature History
- Previous Names
-
- sfrs5
- sfrs5a
- fb49e01
- im:6906390
- wu:fb49e01
- wu:fj09b12
- Type
- protein_coding_gene
- Location
- Chr: 13 Mapping Details/Browsers
- Description
- Predicted to have RNA binding activity. Is expressed in nervous system; otic vesicle; pectoral fin; pharyngeal arch; and solid lens vesicle. Orthologous to human SRSF5 (serine and arginine rich splicing factor 5).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- 4 figures from 3 publications
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
-
- IMAGE:6906390 (1 image)
Wild Type Expression Summary
- All Phenotype Data
- 2 figures from Joris et al., 2017
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
Human Disease
Domain, Family, and Site Summary
| Type | InterPro ID | Name |
|---|---|---|
| Domain | IPR000504 | RNA recognition motif domain |
| Domain | IPR047190 | Serine/arginine-rich splicing factor 4 (SRSF4)-like, RNA recognition motif 2 |
| Homologous_superfamily | IPR012677 | Nucleotide-binding alpha-beta plait domain superfamily |
| Homologous_superfamily | IPR035979 | RNA-binding domain superfamily |
Domain Details Per Protein
| Protein | Length | Nucleotide-binding alpha-beta plait domain superfamily | RNA-binding domain superfamily | RNA recognition motif domain | Serine/arginine-rich splicing factor 4 (SRSF4)-like, RNA recognition motif 2 |
|---|---|---|---|---|---|
|
UniProtKB:Q6TGT9
|
259 | ||||
|
UniProtKB:F8W2Y8
|
133 |
| Type | Name | Annotation Method | Length (nt) | Analysis |
|---|---|---|---|---|
| aberrant processed transcript |
srsf5a-203
(1)
|
Havana | 1514 nt | |
| mRNA |
srsf5a-201
(1)
|
Havana | 1310 nt | |
| ncRNA |
srsf5a-002
(1)
|
Havana | 2356 nt | |
| ncRNA |
srsf5a-004
(1)
|
Havana | 715 nt |
Interactions and Pathways
No data available
Plasmids
No data available