ZFIN is now using GRCz12tu for Genomic Data
Gene
safb
- ID
- ZDB-GENE-030131-698
- Name
- scaffold attachment factor B
- Symbol
- safb Nomenclature History
- Previous Names
-
- wu:fb40a03
- wu:fd42g06
- zgc:55387
- Type
- protein_coding_gene
- Location
- Chr: 22 Mapping Details/Browsers
- Genome Assembly
- GRCz12tu
- Annotation Status
- Current
- Description
- Predicted to enable sequence-specific DNA binding activity. Predicted to be involved in regulation of mRNA processing and regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to several human genes including SAFB (scaffold attachment factor B).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- 2 figures from Thisse et al., 2004
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
Wild Type Expression Summary
- All Phenotype Data
- No data available
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
Human Disease
Domain, Family, and Site Summary
| Type | InterPro ID | Name |
|---|---|---|
| Domain | IPR000504 | RNA recognition motif domain |
| Domain | IPR003034 | SAP domain |
| Domain | IPR034781 | Scaffold attachment factor B1/2, RNA binding domain |
| Family | IPR051738 | Scaffold Attachment Factor and Modulators |
| Homologous_superfamily | IPR012677 | Nucleotide-binding alpha-beta plait domain superfamily |
| Homologous_superfamily | IPR035979 | RNA-binding domain superfamily |
| Homologous_superfamily | IPR036361 | SAP domain superfamily |
Domain Details Per Protein
| Protein | Additional Resources | Length | Nucleotide-binding alpha-beta plait domain superfamily | RNA-binding domain superfamily | RNA recognition motif domain | SAP domain | SAP domain superfamily | Scaffold Attachment Factor and Modulators | Scaffold attachment factor B1/2, RNA binding domain |
|---|---|---|---|---|---|---|---|---|---|
| UniProtKB:Q803X6 | InterPro | 855 |
- Genome Browsers
Interactions and Pathways
No data available
Plasmids
No data available
- Genome Browsers