Gene
hdlbpb
- ID
- ZDB-GENE-030131-6822
- Name
- high density lipoprotein binding protein b
- Symbol
- hdlbpb Nomenclature History
- Previous Names
- Type
- protein_coding_gene
- Location
- Chr: 12 Mapping Details/Browsers
- Description
- Predicted to enable mRNA binding activity. Predicted to be located in cytoplasm and nucleus. Is expressed in brain; mesoderm; pectoral fin; and somite. Orthologous to human HDLBP (high density lipoprotein binding protein).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- 13 figures from 2 publications
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
-
- eu532 (1 image)
Wild Type Expression Summary
- All Phenotype Data
- No data available
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
Allele | Type | Localization | Consequence | Mutagen | Supplier |
---|---|---|---|---|---|
sa22089 | Allele with one point mutation | Unknown | Premature Stop | ENU | |
sa35286 | Allele with one point mutation | Unknown | Premature Stop | ENU | |
sa35287 | Allele with one point mutation | Unknown | Splice Site | ENU | |
sa42024 | Allele with one point mutation | Unknown | Splice Site | ENU | |
sa44761 | Allele with one point mutation | Unknown | Unknown | ENU | |
uab314 | Allele with one delins | Unknown | Unknown | CRISPR |
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Targeting Reagent | Created Alleles | Citations |
---|---|---|
CRISPR1-hdlbpb | (2) | |
CRISPR2-hdlbpb | (2) | |
CRISPR3-hdlbpb | (2) | |
CRISPR4-hdlbpb | (2) |
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Human Disease
Domain, Family, and Site Summary
Domain Details Per Protein
Protein | Additional Resources | Length | K Homology domain | K Homology domain, type 1 | K Homology domain, type 1 superfamily |
---|---|---|---|---|---|
UniProtKB:E7FCA5 | InterPro | 1259 |
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Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
---|---|---|---|---|---|
mRNA |
hdlbpb-202
(1)
|
Ensembl | 4,622 nt | ||
mRNA |
hdlbpb-204
(1)
|
Ensembl | 3,780 nt | ||
ncRNA |
hdlbpb-002
(1)
|
Ensembl | 503 nt | ||
ncRNA |
hdlbpb-003
(1)
|
Ensembl | 836 nt |
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Interactions and Pathways
No data available
Plasmids
No data available
No data available
Relationship | Marker Type | Marker | Accession Numbers | Citations |
---|---|---|---|---|
Contained in | BAC | DKEY-38P12 | ZFIN Curated Data | |
Encodes | EST | eu532 | Thisse et al., 2005 | |
Encodes | EST | fa07b03 | ||
Encodes | EST | fb74a12 | Rauch et al., 2003 |
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Type | Accession # | Sequence | Length (nt/aa) | Analysis |
---|---|---|---|---|
RNA | RefSeq:XM_021480308 (1) | 4636 nt | ||
Genomic | GenBank:AL929346 (1) | 184825 nt | ||
Polypeptide | UniProtKB:E7FCA5 (1) | 1259 aa |
- Capps, M.E.S., Moyer, A.J., Conklin, C.L., Martina, V., Torija-Olson, E.G., Klein, M.C., Gannaway, W.C., Calhoun, C.C.S., Vivian, M.D., Thyme, S.B. (2025) Disrupted diencephalon development and neuropeptidergic pathways in zebrafish with autism-risk mutations. Proceedings of the National Academy of Sciences of the United States of America. 122:e2402557122e2402557122
- Elkon, R., Milon, B., Morrison, L., Shah, M., Vijayakumar, S., Racherla, M., Leitch, C.C., Silipino, L., Hadi, S., Weiss-Gayet, M., Barras, E., Schmid, C.D., Ait-Lounis, A., Barnes, A., Song, Y., Eisenman, D.J., Eliyahu, E., Frolenkov, G.I., Strome, S.E., Durand, B., Zaghloul, N.A., Jones, S.M., Reith, W., Hertzano, R. (2015) RFX transcription factors are essential for hearing in mice. Nature communications. 6:8549
- De Wit, M., Keil, D., van der Ven, K., Vandamme, S., Witters, E., and De Coen, W. (2010) An integrated transcriptomic and proteomic approach characterising estrogenic and metabolic effects of 17 alpha-ethinylestradiol in zebrafish (Danio rerio). General and comparative endocrinology. 167(2):190-201
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