ZFIN is now using GRCz12tu for Genomic Data
Gene
rasgef1ba
- ID
- ZDB-GENE-030131-5783
- Name
- RasGEF domain family, member 1Ba
- Symbol
- rasgef1ba Nomenclature History
- Previous Names
-
- rasgef1b
- wu:fi18a09
- zgc:66487
- Type
- protein_coding_gene
- Location
- Chr: 5 Mapping Details/Browsers
- Genome Assembly
- GRCz12tu
- Annotation Status
- Current
- Description
- Predicted to enable guanyl-nucleotide exchange factor activity. Predicted to be involved in Ras protein signal transduction. Predicted to act upstream of or within small GTPase-mediated signal transduction. Predicted to be active in plasma membrane. Is expressed in several structures, including axis; forerunner cell group; germ ring; mesoderm; and nervous system. Orthologous to human RASGEF1B (RasGEF domain family member 1B).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- 12 figures from 4 publications
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
-
- MGC:66487 (21 images)
Wild Type Expression Summary
- All Phenotype Data
- No data available
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
Human Disease
Domain, Family, and Site Summary
| Type | InterPro ID | Name |
|---|---|---|
| Conserved_site | IPR019804 | Ras guanine-nucleotide exchange factor, conserved site |
| Domain | IPR000651 | Ras-like guanine nucleotide exchange factor, N-terminal |
| Domain | IPR001895 | Ras guanine-nucleotide exchange factors catalytic domain |
| Family | IPR008937 | Ras-like guanine nucleotide exchange factor |
| Homologous_superfamily | IPR023578 | Ras guanine nucleotide exchange factor domain superfamily |
| Homologous_superfamily | IPR036964 | Ras guanine-nucleotide exchange factor, catalytic domain superfamily |
Domain Details Per Protein
| Protein | Additional Resources | Length | Ras guanine-nucleotide exchange factor, catalytic domain superfamily | Ras guanine-nucleotide exchange factor, conserved site | Ras guanine nucleotide exchange factor domain superfamily | Ras guanine-nucleotide exchange factors catalytic domain | Ras-like guanine nucleotide exchange factor | Ras-like guanine nucleotide exchange factor, N-terminal |
|---|---|---|---|---|---|---|---|---|
| UniProtKB:Q6DHR3 | InterPro | 514 | ||||||
| UniProtKB:A0A286YBK7 | InterPro | 531 | ||||||
| UniProtKB:A0AB13AAR1 | InterPro | 473 |
- Genome Browsers
| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| mRNA |
rasgef1ba-201
(1)
|
Ensembl | 3,039 nt | ||
| mRNA |
rasgef1ba-203
(1)
|
Ensembl | 2,173 nt | ||
| mRNA |
rasgef1ba-204
(1)
|
Ensembl | 4,454 nt | ||
| mRNA |
rasgef1ba-205
(1)
|
Ensembl | 4,406 nt | ||
| ncRNA |
rasgef1ba-003
(1)
|
Ensembl | 401 nt |
Interactions and Pathways
No data available
Plasmids
No data available
- Genome Browsers