Gene
ccdc18
- ID
- ZDB-GENE-030131-5414
- Name
- coiled-coil domain containing 18
- Symbol
- ccdc18 Nomenclature History
- Previous Names
-
- fd16d12
- si:ch211-132a5.3
- si:dkeyp-1a11.3
- wu:fd16d12
- Type
- protein_coding_gene
- Location
- Chr: 2 Mapping Details/Browsers
- Description
- Predicted to enable guanylate cyclase activity. Predicted to be located in cytoplasm. Orthologous to human CCDC18 (coiled-coil domain containing 18).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- No data available
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
- No data available
Wild Type Expression Summary
- All Phenotype Data
- No data available
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
| Allele | Type | Localization | Consequence | Mutagen | Supplier |
|---|---|---|---|---|---|
| sa691 | Allele with one point mutation | Unknown | Premature Stop | ENU | |
| sa14616 | Allele with one point mutation | Unknown | Premature Stop | ENU | |
| sa25099 | Allele with one point mutation | Unknown | Premature Stop | ENU | |
| sa39774 | Allele with one point mutation | Unknown | Premature Stop | ENU | |
| sa39775 | Allele with one point mutation | Unknown | Splice Site | ENU | |
| sa39776 | Allele with one point mutation | Unknown | Splice Site | ENU | |
| sa39777 | Allele with one point mutation | Unknown | Premature Stop | ENU | |
| y337Et | Transgenic insertion | Unknown | Unknown | DNA |
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No data available
Human Disease
Domain, Family, and Site Summary
No data available
Domain Details Per Protein
| Protein | Additional Resources | Length |
|---|---|---|
| UniProtKB:A0AB32U0C4 | InterPro | 1235 |
| UniProtKB:A8E7I8 | InterPro | 1321 |
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| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| mRNA |
ccdc18-201
(1)
|
Ensembl | 4,507 nt | ||
| mRNA |
ccdc18-202
(1)
|
Ensembl | 4,899 nt | ||
| mRNA |
ccdc18-203
(1)
|
Ensembl | 4,824 nt |
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Interactions and Pathways
No data available
Plasmids
No data available
No data available
| Relationship | Marker Type | Marker | Accession Numbers | Citations |
|---|---|---|---|---|
| Contained in | BAC | CH211-132A5 | ZFIN Curated Data | |
| Contained in | BAC | DKEYP-1A11 | ZFIN Curated Data | |
| Contained in | Fosmid | CH1073-215P4 | ZFIN Curated Data | |
| Encodes | EST | fd16d12 |
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| Type | Accession # | Sequence | Length (nt/aa) | Analysis |
|---|---|---|---|---|
| RNA | RefSeq:NM_001365136 (1) | 4534 nt | ||
| Genomic | GenBank:BX927121 (1) | 177223 nt | ||
| Polypeptide | UniProtKB:A8E7I8 (1) | 1321 aa |
- Comparative Orthology
- Alliance
- Elkon, R., Milon, B., Morrison, L., Shah, M., Vijayakumar, S., Racherla, M., Leitch, C.C., Silipino, L., Hadi, S., Weiss-Gayet, M., Barras, E., Schmid, C.D., Ait-Lounis, A., Barnes, A., Song, Y., Eisenman, D.J., Eliyahu, E., Frolenkov, G.I., Strome, S.E., Durand, B., Zaghloul, N.A., Jones, S.M., Reith, W., Hertzano, R. (2015) RFX transcription factors are essential for hearing in mice. Nature communications. 6:8549
- Marquart, G.D., Tabor, K.M., Brown, M., Strykowski, J.L., Varshney, G.K., LaFave, M.C., Mueller, T., Burgess, S.M., Higashijima, S., Burgess, H.A. (2015) A 3D Searchable Database of Transgenic Zebrafish Gal4 and Cre Lines for Functional Neuroanatomy Studies. Frontiers in neural circuits. 9:78
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