Gene

prpf40a

ID
ZDB-GENE-030131-274
Name
PRP40 pre-mRNA processing factor 40 homolog A
Symbol
prpf40a Nomenclature History
Previous Names
  • fb18h07
  • fe47a12
  • fnbp3 (1)
  • wu:fb18h07
  • wu:fe47a12
Type
protein_coding_gene
Location
Chr: 9 Mapping Details/Browsers
Description
Predicted to enable RNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to act upstream of or within mRNA cis splicing, via spliceosome. Predicted to be located in nuclear matrix and nuclear speck. Predicted to be part of U1 snRNP and U2-type prespliceosome. Orthologous to human PRPF40A (pre-mRNA processing factor 40 homolog A).
Genome Resources
Note
None
Comparative Information
Expression
All Expression Data
1 figure from Thisse et al., 2004
Cross-Species Comparison
High Throughput Data
Thisse Expression Data
Wild Type Expression Summary
Phenotype
All Phenotype Data
No data available
Cross-Species Comparison
Alliance
Phenotype Summary
Mutations
Mutants
Allele Type Localization Consequence Mutagen Supplier
sa1197Allele with one point mutationUnknownPremature StopENU
sa13254Allele with one point mutationUnknownPremature StopENU
sa31699Allele with one point mutationUnknownSplice SiteENU
sa41344Allele with one point mutationUnknownSplice SiteENU
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Sequence Targeting Reagents
No data available
Human Disease
Associated With prpf40a Human Ortholog
No data available
Associated With prpf40a Via Experimental Models
No data available
Gene Ontology
Protein Domains
Domain, Family, and Site Summary
Type InterPro ID Name
Domain IPR001202 WW domain
Domain IPR002713 FF domain
Family IPR039726 Pre-mRNA-processing factor Prp40
Homologous_superfamily IPR036020 WW domain superfamily
Homologous_superfamily IPR036517 FF domain superfamily
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Domain Details Per Protein
Protein Additional Resources Length FF domain FF domain superfamily Pre-mRNA-processing factor Prp40 WW domain WW domain superfamily
UniProtKB:A0A8M6Z7Z9 InterPro 749
UniProtKB:Q7ZUE4 InterPro 851
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Transcripts
Genome Browsers
Genome Build: GRCz11Chromosome: 9
Type Name Annotation Method Has Havana Data Length (nt) Analysis
mRNA prpf40a-201 (1) Ensembl 3,285 nt
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Interactions and Pathways
No data available
Antibodies
No data available
Plasmids
No data available
Constructs
No data available
Marker Relationships
Relationship Marker Type Marker Accession Numbers Citations
Contained inBACCH211-279A7ZFIN Curated Data
EncodesESTfb18h07
EncodescDNAMGC:56384ZFIN Curated Data
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Sequences
Orthology
Comparative Orthology
Alliance
Gene Tree
Ensembl
Species Symbol Chromosome Accession # Evidence
HumanPRPF40A2
Conserved genome location (synteny) (1)
Amino acid sequence comparison (1)
MousePrpf40a2
Amino acid sequence comparison (1)
Conserved genome location (synteny) (1)
Citations
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