ZFIN is now using GRCz12tu for Genomic Data
Gene
cd248a
- ID
- ZDB-GENE-030131-2084
- Name
- CD248 molecule, endosialin a
- Symbol
- cd248a Nomenclature History
- Previous Names
-
- fb96b12
- wu:fb96b12
- zgc:162651
- Type
- protein_coding_gene
- Location
- Chr: 7 Mapping Details/Browsers
- Genome Assembly
- GRCz12tu
- Annotation Status
- Current
- Description
- Predicted to enable extracellular matrix binding activity and extracellular matrix protein binding activity. Acts upstream of or within regulation of innate immune response and response to lipopolysaccharide. Predicted to be located in membrane. Predicted to be active in external side of plasma membrane. Is expressed in eye; head; pharyngeal arch; and somite. Orthologous to human CD248 (CD248 molecule).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- 8 figures from 4 publications
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
- No data available
Wild Type Expression Summary
Phenotype Summary
Mutations
Human Disease
Domain, Family, and Site Summary
| Type | InterPro ID | Name |
|---|---|---|
| Conserved_site | IPR018097 | EGF-like calcium-binding, conserved site |
| Domain | IPR000742 | EGF-like domain |
| Domain | IPR001304 | C-type lectin-like |
| Domain | IPR001881 | EGF-like calcium-binding domain |
| Domain | IPR026823 | Complement Clr-like EGF domain |
| Domain | IPR049883 | NOTCH1 EGF-like calcium-binding domain |
| Family | IPR051505 | C-type lectin domain-containing protein |
| Homologous_superfamily | IPR009030 | Growth factor receptor cysteine-rich domain superfamily |
| Homologous_superfamily | IPR016186 | C-type lectin-like/link domain superfamily |
| Homologous_superfamily | IPR016187 | C-type lectin fold |
| PTM | IPR000152 | EGF-type aspartate/asparagine hydroxylation site |
Domain Details Per Protein
| Protein | Additional Resources | Length | Complement Clr-like EGF domain | C-type lectin domain-containing protein | C-type lectin fold | C-type lectin-like | C-type lectin-like/link domain superfamily | EGF-like calcium-binding, conserved site | EGF-like calcium-binding domain | EGF-like domain | EGF-type aspartate/asparagine hydroxylation site | Growth factor receptor cysteine-rich domain superfamily | NOTCH1 EGF-like calcium-binding domain |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| UniProtKB:A0A0R4IKQ6 | InterPro | 719 |
- Genome Browsers
| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| mRNA |
cd248a-201
(1)
|
Ensembl | 3,092 nt | ||
| mRNA |
cd248a-202
(1)
|
Ensembl | 3,000 nt |
Interactions and Pathways
No data available
Plasmids
No data available
- Genome Browsers