Gene

rpl13a

ID

ZDB-GENE-030131-168

Name

ribosomal protein L13a

Symbol

rpl13a Nomenclature History

Previous Names

fd05d08
hm:zehp0384
wu:fa95e06
wu:fb08g07
wu:fd05d08

Type

protein_coding_gene

Location

Chr: 17 Mapping Details/Browsers

Description

Predicted to have mRNA binding activity. Predicted to be involved in negative regulation of translation. Predicted to localize to cytosolic large ribosomal subunit. Is expressed in several structures, including blastomere; heart; liver; musculature system; and pleuroperitoneal region. Orthologous to human RPL13A (ribosomal protein L13a).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

7 figures from 5 publications

Cross-Species Comparison

High Throughput Data

GEO (1)

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Thisse Expression Data

MGC:56275 (1 image)

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With rpl13a Human Ortholog

No data available

Associated With rpl13a Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Conserved_site	IPR023563	Large ribosomal subunit protein uL13, conserved site
Family	IPR005755	Large ribosomal subunit protein uL13, eukaryotic/archaeal
Family	IPR005822	Large ribosomal subunit protein uL13
Homologous_superfamily	IPR036899	Large ribosomal subunit protein uL13 superfamily

Domain Details Per Protein

Protein	Length	Large ribosomal subunit protein uL13	Large ribosomal subunit protein uL13, conserved site	Large ribosomal subunit protein uL13, eukaryotic/archaeal	Large ribosomal subunit protein uL13 superfamily
UniProtKB:Q1LYB7 InterPro PDB	205
UniProtKB:Q7ZUR9 InterPro	205

Transcripts

Genome Browsers

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	rpl13a-201 (1) Ensembl	Havana	1123 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
ncRNA	rpl13a-002 (1) Ensembl	Havana	905 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
ncRNA	rpl13a-003 (1) Ensembl	Havana	371 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
ncRNA	rpl13a-004 (1) Ensembl	Havana	918 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
ncRNA	rpl13a-005 (1) Ensembl	Havana	831 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
ncRNA	rpl13a-006 (1) Ensembl	Havana	581 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations