Gene

npc2.1

ID
ZDB-GENE-021206-13
Name
NPC intracellular cholesterol transporter 2, tandem duplicate 1
Symbol
npc2.1 Nomenclature History
Previous Names
  • npc2
  • cb292 (1)
  • sb:cb292 (1)
Type
protein_coding_gene
Location
Chr: 17 Mapping Details/Browsers
Description
Predicted to enable cholesterol binding activity. Acts upstream of or within several processes, including embryonic organ morphogenesis; nervous system development; and otic vesicle development. Predicted to be located in endoplasmic reticulum; extracellular region; and lysosome. Is expressed in several structures, including heart; liver; muscle; pleuroperitoneal region; and yolk syncytial layer. Human ortholog(s) of this gene implicated in Niemann-Pick disease and Niemann-Pick disease type C2. Orthologous to human NPC2 (NPC intracellular cholesterol transporter 2).
Genome Resources
Note
None
Comparative Information
Expression
All Expression Data
8 figures from 3 publications
Cross-Species Comparison
High Throughput Data
Thisse Expression Data
Wild Type Expression Summary
Phenotype
All Phenotype Data
20 figures from 3 publications
Cross-Species Comparison
Alliance
Phenotype Summary
Mutations
Mutants
Sequence Targeting Reagents
Human Disease
Associated With npc2.1 Human Ortholog
Disease Ontology Term Multi-Species Data OMIM Term OMIM Phenotype ID
Niemann-Pick disease type C2 Alliance Niemann-pick disease, type C2 607625
1 - 1 of 1
Associated With npc2.1 Via Experimental Models
No data available
Gene Ontology
Protein Domains
Domain, Family, and Site Summary
Type InterPro ID Name
Domain IPR003172 MD-2-related lipid-recognition domain
Domain IPR033916 Npc2 like, ML domain
Family IPR039670 Sterol transport protein NPC2-like
Homologous_superfamily IPR014756 Immunoglobulin E-set
1 - 4 of 4
Domain Details Per Protein
Protein Additional Resources Length Immunoglobulin E-set MD-2-related lipid-recognition domain Npc2 like, ML domain Sterol transport protein NPC2-like
UniProtKB:Q9DGJ3 InterPro 149
UniProtKB:A0A8M9PE29 InterPro 149
1 - 2 of 2
Transcripts
Genome Browsers
Type Name Annotation Method Has Havana Data Length (nt) Analysis
mRNA npc2-201 (1) Ensembl 1,023 nt
mRNA npc2-202 (1) Ensembl 803 nt
ncRNA npc2-002 (1) Ensembl 886 nt
1 - 3 of 3
Interactions and Pathways
No data available
Antibodies
No data available
Plasmids
No data available
Constructs
Marker Relationships
Sequences
Orthology
Comparative Orthology
Alliance
Gene Tree
Ensembl
Citations