ZFIN is now using GRCz12tu for Genomic Data
Gene
hoxa3a
- ID
- ZDB-GENE-000823-3
- Name
- homeobox A3a
- Symbol
- hoxa3a Nomenclature History
- Previous Names
-
- hoxa3
- cb332 (1)
- Type
- protein_coding_gene
- Location
- Chr: 19 Mapping Details/Browsers
- Genome Assembly
- GRCz12tu
- Annotation Status
- Current
- Description
- Enables DNA binding activity. Predicted to be involved in anterior/posterior pattern specification; embryonic skeletal system morphogenesis; and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of DNA-templated transcription. Predicted to be active in nucleus. Is expressed in several structures, including ectoderm; hindbrain; hindbrain neural keel; hindbrain neural plate; and pharyngeal arch. Orthologous to human HOXA3 (homeobox A3).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- 25 figures from 15 publications
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
-
- cb332 (13 images)
Wild Type Expression Summary
- All Phenotype Data
- No data available
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
Human Disease
Domain, Family, and Site Summary
| Type | InterPro ID | Name |
|---|---|---|
| Conserved_site | IPR001827 | Homeobox protein, antennapedia type, conserved site |
| Conserved_site | IPR017970 | Homeobox, conserved site |
| Domain | IPR001356 | Homeodomain |
| Domain | IPR020479 | Homeodomain, metazoa |
| Domain | IPR025281 | Domain of unknown function DUF4074 |
| Homologous_superfamily | IPR009057 | Homedomain-like superfamily |
Domain Details Per Protein
| Protein | Additional Resources | Length | Domain of unknown function DUF4074 | Homedomain-like superfamily | Homeobox, conserved site | Homeobox protein, antennapedia type, conserved site | Homeodomain | Homeodomain, metazoa |
|---|---|---|---|---|---|---|---|---|
| UniProtKB:A0A0N4SUA4 | InterPro | |||||||
| UniProtKB:A0A0N4SU55 | InterPro | |||||||
| UniProtKB:A0A0N4STW5 | InterPro | |||||||
| UniProtKB:Q8AWZ2 | InterPro | 410 | ||||||
| UniProtKB:A0AB32T9S9 | InterPro | 410 |
- Genome Browsers
| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| mRNA |
hoxa3a-202
(1)
|
Ensembl | 492 nt | ||
| mRNA |
hoxa3a-203
(1)
|
Ensembl | 2,200 nt | ||
| mRNA |
hoxa3a-204
(1)
|
Ensembl | 358 nt | ||
| mRNA |
hoxa3a-205
(1)
|
Ensembl | 816 nt | ||
| mRNA |
hoxa3a-207
(1)
|
Ensembl | 405 nt | ||
| mRNA |
hoxa3a-208
(1)
|
Ensembl | 1,345 nt | ||
| mRNA |
hoxa3a-209
(1)
|
Ensembl | 2,202 nt | ||
| mRNA |
hoxa4a-210
(1)
|
Ensembl | 1,725 nt | ||
| mRNA |
hoxa4a-211
(1)
|
Ensembl | 1,519 nt | ||
| ncRNA |
hoxa3a-007
(1)
|
Ensembl | 438 nt | ||
| ncRNA |
hoxa3a-008
(1)
|
Ensembl | 567 nt |
Interactions and Pathways
No data available
Plasmids
- Genome Browsers