Genomic Feature

oi3

ID
ZDB-ALT-220309-4
Name
oi3
Synonyms
None
Affected Genomic Region
Construct
None
Type
Allele with one deletion (1)
Protocol
embryos treated with
Lab of Origin
Toshikatsu Hanada Lab
Current Source
Other Pages
Notes
No data available
Genome Browser
Genome Build: GRCz11Chromosome: 21
Variants
Variant Type
Small Deletion
Variant Location
Chr 21: 41067262 - 41067266 (GRCz11) (1) Details
Nucleotide change
CGGTG/-
Variant Notes
None
Effect on DNA/cDNA, transcript, protein (from publications)
DNA/cDNA Change
5 bp deleted in Exon 2 (1)
Transcript Consequence
None
Protein Consequence
None
Sequences
Flanking Sequence
TTAAACGGTCAAGTAAATGTCATTAAAAATTACAAAATAAATCCCACACTCTTTTAACGAGTTTCACGGTGTAGTGCATATTTTAGATAAAAATCTACGTTTGAGTCAAGTTAGAATTGCATAAAGCTAAAACAATATTAATTTTATTTCAATTAGGTGTGCAGTTATACTGCAATGGCAAAGCTTAAATTAAAGCAGCTTTAAAGCTTTACATTTTTAAAGTCTTATTTTTCAGCACTGGGCTCTTTAATAAATAAATAAAATGAACTGCTTACCGGCTCAAATGGTAGCACCATAAAATCTTGGATTCCATACTTCTCTCTCAATGCCTGAAAAAAATGTTCAGGTGTATTTGTATCAGGTACATTCATCTTATCTGAAATGCAGTCATCTCGAAATGCACTAAGGAAATTTTAACTCTATAGAAAATTAAATGAAATGCCATAAAACAAGCAAAACACCTGTTTCTTTTTAATGTCCCTTAGAGCTGCAATATCATC
CGGTG/- CATCTGACGGCACACTGGTGACGACTCCAGTTCCTGTGAAGACAAGTGAGATTTCAACAACATACCATGATGACTTAACCCTGGCATTATCTTCGAATTCTGCATACACCGTTCACCCTTCAGGTCAAAATATAGCATATACTGTTATAGTTCTTCTTTCTTTTTTAAATATTTCTCAAATTATGGTTAACAGAGTAAGGAAATTTTCACAGTATGTCTGATAATATTTTTTCGTCTGGAGAAAGTCTTGTTTGTTTTATTCCGACTAGAATAAAAGCAGTTTTTAATTTTTTTAAAACATTTTAAAGGTCAAAATTATTAGCCCCTTTAAGCTATATATTTTTTCAATATTGTAAAGCAATGATTTGTTCTGTAGACTAACTTGCCTAATTACCCTAATTAACCTAGTTAAGCCTTTAAATGTCACTTTAAGATGTATAGAAGCATCTTGAAAATAGTCAAATATTATTTACTGTCATCATGGCAAAGATAAAATAAAT
Additional Sequence
None
Fish
Fish Genomic Feature Zygosity Parental Zygosity Affected Genomic Regions Phenotype Gene Expression
lars1boi3/oi3 (AB)Homozygous♀+/- ♂+/-4 figures with image from Inoue et al., 2021
lars1boi3/+ (AB)Heterozygous♀+/- ♂+/-Figure 2 with image from Inoue et al., 2021
lars1boi3/oi3; oi2Tg (AB)Complex2 figures with image from Inoue et al., 2021Figure 2 with image from Inoue et al., 2021
lars1boi3/oi3 + MO1-atg5 (AB)ComplexFigure 5 with image from Inoue et al., 2021
lars1boi3/oi3; oi2Tg + MO1-atg5 (AB)ComplexFigure 5 with image from Inoue et al., 2021
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Supplemental Information
Genotyping protocol
None
Citations
TSV
1 - 1 of 1
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