Genomic Feature
szu2
- ID
- ZDB-ALT-210706-1
- Name
- szu2
- Synonyms
- None
- Affected Genomic Region
- Construct
- None
- Type
- Allele with one deletion (1)
- Protocol
- embryos treated with
- Lab of Origin
- Tokumoto Lab
- Current Source
- Other Pages
-
Notes
No data available
Variants
- Variant Type
- Small Deletion
- Variant Location
- Chr 13: 29771465 - 29771470 (GRCz11) (1) Details
- Nucleotide change
- GGATAT/-
- Variant Notes
- None
Effect on DNA/cDNA, transcript, protein (from publications)
- DNA/cDNA Change
- 6 bp deleted (1)
- Transcript Consequence
- None
- Protein Consequence
- Polypeptide Truncation: 12 AA missing (1)
- Flanking Sequence
-
ACAGGCACATCCCATTCTTGAAGAGAGGGGGACTGAGAGACACTCGCCGTGTCCATGTTTTTTCCTGTCATTCCCGCACGAATCTGACTGTACCCCTCAGACTGTTCAGACCAGAAACGCTTCTCCACATCGAGGAATTTACACTGCAGTTTCACCAGAGGACACTGGAGCAGACGCAACCACTAATGCTTGCGGTCCCTTAAATATGTAGCTAACAAATTTTTACTCAACGACTGATTACGCTAACGTTCCTGCGTGAAAGATTTTTGAGAGACCAGTGCAGGACATGATCTGCACCTGACCAGCCTCGTGTCTTCGTTGAATGGACTGATCAGCACGAGATAAAGTTCGTCGCGCGTTGAACAACTTCTTCTGTACACTGGCATTGGAAGCACCGGGCTTTGAACGGATAGCGATCTTTATTAATTTCAATTATAGCTACATAATCAAGGCGAGACGGCGACCTCAGTCGATTATCTTTCCTTCCTTTGCTATCCCAT
GGATAT/- TCACTGCAAAGCAGACCCCTTCTCGGCGATGCACCGTAAGTAAAATAACAGTTTTTTTTCTTCTTAACAAATCTGTAATTTAGCATAAATAAAATATATATATTGTTTAGCTTTTACGTTGAGCTGGCTTTGTAAAACCATAGGCTTACATGTGCGCGTTATTTTTTTCAAAGGTCTTACAAGAAATTTATTAATGATTGTTTTAATAATTTATTTACATAGTACGGTAAAATACGGAAAGTACTCAGCTTAAAAATACACGTGTCCGCTGGTTACATTTCACAGCAATTTAGCCGTTTATGAAAAAAGTAGTTGAGAAAGTCAATTATTATATACAGCGTAATATTAGTTTAATTTAATTTACAATTCTCAATTTTATGTAAAACATCAGTGATTCGCGCGCATTTCATGAGCAACAACATAAGTCATATTTTTAAACTATCATGTTTGGATAAATGACTACTGCCTACATGGGTAAAAATAGATTTAGCTACTGAAAA - Additional Sequence
- None
Fish
Fish | Genomic Feature Zygosity | Parental Zygosity | Affected Genomic Regions | Phenotype | Gene Expression |
---|---|---|---|---|---|
pax2aszu2/szu2 | Homozygous | Unknown | 2 figures from Pachoensuk et al., 2020 | ||
pax2aszu2/szu2 | Homozygous | ♀+/- ♂+/- | |||
pax2aszu2/szu2 | Homozygous | ♀-/- ♂-/- | 2 figures from Pachoensuk et al., 2020 | ||
pax2aszu2/+ | Heterozygous | Unknown | Fig. 3 from Pachoensuk et al., 2020 | ||
pax2aszu2/+ | Heterozygous | ♀+/+ ♂-/- | Fig. 2 from Pachoensuk et al., 2020 | ||
pax2aszu2/+ | Heterozygous | ♀-/- ♂+/+ | 2 figures from Pachoensuk et al., 2020 |
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Supplemental Information
- Genotyping protocol
- None