Genomic Feature
ca304
- ID
- ZDB-ALT-190204-1
- Name
- ca304
- Synonyms
- None
- Affected Genomic Region
- Construct
- None
- Type
- Allele with one deletion (1)
- Protocol
- embryos treated with
- Lab of Origin
- McFarlane Lab
- Current Source
- Other Pages
Notes
No data available
Variants
- Variant Type
- Small Deletion
- Variant Location
- Chr 6: 42820382 - 42820383 (GRCz11) (1) Details
- Nucleotide change
- CT/-
- Variant Notes
- None
Effect on DNA/cDNA, transcript, protein (from publications)
- DNA/cDNA Change
- 2 bp deleted in Exon 1 (1)
- Transcript Consequence
- Premature Stop (1)
- Protein Consequence
- None
- Flanking Sequence
-
ACTGATTTTATTGTTATTTTTTATTATATGTTGGTTGTTTGACACAATTAACCGAATAGCCATTATAATGCAATAGTGAAAATTATTATTTTTTATATTAATTGGGAAATTATGGCAAAGCTAAATATTTCTACATGGAATTTGGAGCAAAATTTTACCATTTGTTTGTAGTCTGAAATTGAGAAGACACATGAAACATAATAAAACAACAGCAGCAACTAACAAAACCCTGATTATCAGCCTAACTCTATTACCACTTAGCATTTAATCAGTAAAATCAAAATGCATATATCAGGAACTCTTTGAGCACATTTATATCTGTCTAAGGCTGATCCTCACTCCCTCCATCCATCCCCATGCAGGACTGATAAATCTCTTGTGGGTTTTATGGATAAAGTGATCATGCAGGGAGCCGGGACTTTGGTGCTGGGGACCCTTCTGGTCTCTGTATTCTCAGCTGTCTCGGTCCACAGCAGCCCTTTGTCTTCCCTGCCACCCGC
CT/- CTGTTCCACGAGTCTTCCTGTCCTTCAAAGGTAAGATGGGTTTCTGCATCTCTCACTGTTGCTCAGTCTGTGGGTGCCTACAGCCCCTGCTGGAGATGACAACCACTGCTTTCCTGTTCAGATTAATATATATTGACAAACAGCTGCTGCTGATATGATAAAGATGGCAAAGGAAGTATTATGTACTTTATTATATTATTTAATAATATAATATCCAGGGTACCAGAGTCTTGTATATTAAAGGGATAGTTCACCTAAAATGGAATGTACTCACCTTCAAGTGGAATGTTCTGTTGAACACAAAAGAAAATGATTTGAAAAATGTTGGAAGCCCATGAGTGTTGACTTCCATAGTAGGAAAAACAGATATTATAGAAAGTCAATGGTTAAAGGTTTCCAGCATTCTTCAAATTATCTTCTTTTGTGTTTAACGGAGAAAAAAACACATGTTTGTGACAGGTTTGTGTTCAGTTTTGGGTGATCTATCCCTTTAAATTTCA - Additional Sequence
- None
Fish
Fish | Genomic Feature Zygosity | Parental Zygosity | Affected Genomic Regions | Phenotype | Gene Expression |
---|---|---|---|---|---|
sema3faca304/ca304 | Homozygous | ♀+/- ♂+/- | 3 figures ![]() | 2 figures ![]() | |
sema3faca304/ca304; ci5Tg | Complex | 4 figures ![]() | 4 figures ![]() | ||
sema3faca304/ca304; nt11Tg | Complex | Fig. 6 ![]() | Fig. 6 ![]() | ||
sema3faca304/+; ci5Tg | Complex | 2 figures ![]() | 2 figures ![]() |
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Supplemental Information
- Genotyping protocol
- None
- Hehr, C.L., Halabi, R., McFarlane, S. (2022) Spatial regulation of amacrine cell genesis by Semaphorin 3f. Developmental Biology. 491:66-81
- Halabi, R., Watterston, C., Hehr, C.L., Mori-Kreiner, R., Childs, S.J., McFarlane, S. (2021) Semaphorin 3fa Controls Ocular Vascularization From the Embryo Through to the Adult. Investigative ophthalmology & visual science. 62:21
- Watterston, C., Halabi, R., McFarlane, S., Childs, S.J. (2021) Endothelial Semaphorin 3fb regulates Vegf pathway-mediated angiogenic sprouting. PLoS Genetics. 17:e1009769
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