Genomic Feature
uob205
- ID
- ZDB-ALT-151019-1
- Name
- uob205
- Synonyms
- None
- Affected Genomic Region
- Construct
- None
- Type
- Allele with one deletion (1)
- Protocol
- embryos treated with
- Lab of Origin
- Ferenc Müller Lab
- Current Source
- Other Pages
Notes
No data available
Variants
- Variant Type
- Small Deletion
- Variant Location
- Chr 5: 22225917 - 22225928 (GRCz11) (1) Details
- Nucleotide change
- TGTCACTTGATA/-
- Variant Notes
Effect on DNA/cDNA, transcript, protein (from publications)
- DNA/cDNA Change
- 12 bp deleted from position 295 to 306 (1)
- Transcript Consequence
- Inframe Deletion (1)
- Protein Consequence
- Amino Acid Deletion: 4 AA missing from position 99 to 102 (1)
- Flanking Sequence
-
ATCATGAAATGCTTCTACCTTAATCTATTTGCCCCTGGTGATAAAGTTGTTCAACTTAAACTTAAAAAGATAATGCTCTTTGCAACATAAATTTGAGTTACTGGATCTGGAGGTCTGTACACCAATTTCTTTCACTCCAGGTTATTTTTGCTCAGTTCTCACACACACACAAGGCTTCAGACTTTATGCTTGTTGGCTTTGTTGAGGCAGGAGAATATCCAGCTCTGCCTGTAAACATTTTTCTTTTGTGATAGATGAATAACATTTTGTCAGTAATTACTTTACTTGTGTATATAAAAAAACAACGCATTCAAAGTTTTATTGAATCAATTAAACGTATTACATTTTACAAACATGTAAGACCTTGTTTATTTAGACTGTTTGGATGATATGGACTTATGAACATATAAAATGAATAAAAGTGTGCTTGTGGATGTGTGTGTGCGCGCATGTGTGTGTCTATATTAGGAGCATGCGAGGGCACTCTGGCCTGTTCCACC
TGTCACTTGATA/- TTTGAGGAGAATGTGTTTGACAAACTGGAGCCAATGGTGGATGAAGAGATTGACATGCTGGATTTGGCTTACGGAATCACCAAGACGTAAGAATCCTGGATTTAATATATAAAGCTTGTCTGATTAAGTCAGTAATGAGTGCTAAAAATGTCCATAAATATTTCTATAATAATAACAACAATGCATATTATAGTTTAATTAGAGTGTTATGTTGTTTTCATTCATTTAAAATATTTATTATATATTCATTAAGAATGAAATGGACTAGAATTAATATGGCATGATGAAATATTGACTAAAAGTACAGGTAAACAGCAAACTTTCCTTTATTAAAACGTATAGCTCTTTTTTTTTTCTCTGCAAATTGTTGCAATGATTTTTTGGTGCTGTTTTCTCATTGGCTCAGATCTCGATTGGGTTGTCAGGTGACTGTGGAGCGCTGGATGGACGGAATGACTGTTCGCGTGCCACAAGATATCAAAGATCAACGAGGAAAACAA - Additional Sequence
- None
Fish
Fish | Genomic Feature Zygosity | Parental Zygosity | Affected Genomic Regions | Phenotype | Gene Expression |
---|---|---|---|---|---|
fdx1buob205/uob205 | Homozygous | ♀+/- ♂+/- | 7 figures ![]() | 5 figures ![]() | |
fdx1buob205/uob205 | Homozygous | Unknown | 4 figures from Oakes et al., 2019 | 4 figures from Oakes et al., 2019 |
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Supplemental Information
- Genotyping protocol
- None
- Oakes, J.A., Li, N., Wistow, B.R.C., Griffin, A., Barnard, L., Storbeck, K.H., Cunliffe, V.T., Krone, N.P. (2019) Ferredoxin 1b deficiency leads to testis disorganization, impaired spermatogenesis and feminization in zebrafish. Endocrinology. 160(10):2401-2416
- Weger, M., Weger, B.D., Görling, B., Poschet, G., Yildiz, M., Hell, R., Luy, B., Akcay, T., Güran, T., Dickmeis, T., Müller, F., Krone, N. (2018) Glucocorticoid deficiency causes transcriptional and post-transcriptional reprogramming of glutamine metabolism. EBioMedicine. 36:376-389
- Griffin, A., Parajes, S., Weger, M., Zaucker, A., Taylor, A.E., O'Neil, D.M., Müller, F., Krone, N. (2016) Ferredoxin 1b (Fdx1b) is the essential mitochondrial redox partner for cortisol biosynthesis in zebrafish. Endocrinology. 157(3):1122-34
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