Genomic Feature

uob205

ID
ZDB-ALT-151019-1
Name
uob205
Synonyms
None
Affected Genomic Region
Construct
None
Type
Allele with one deletion (1)
Protocol
embryos treated with
Lab of Origin
Ferenc Müller Lab
Current Source
Other Pages
Notes
No data available
Genome Browser
Genome Build: GRCz11Chromosome: 5
Variants
Variant Type
Small Deletion
Variant Location
Chr 5: 22225917 - 22225928 (GRCz11) (1) Details
Nucleotide change
TGTCACTTGATA/-
Variant Notes
This allele has a 12 bp deletion leading to a 4 aa in-frame deletion  ...
Effect on DNA/cDNA, transcript, protein (from publications)
DNA/cDNA Change
12 bp deleted from position 295 to 306 (1)
Transcript Consequence
Inframe Deletion (1)
Protein Consequence
Amino Acid Deletion: 4 AA missing from position 99 to 102 (1)
Sequences
Flanking Sequence
ATCATGAAATGCTTCTACCTTAATCTATTTGCCCCTGGTGATAAAGTTGTTCAACTTAAACTTAAAAAGATAATGCTCTTTGCAACATAAATTTGAGTTACTGGATCTGGAGGTCTGTACACCAATTTCTTTCACTCCAGGTTATTTTTGCTCAGTTCTCACACACACACAAGGCTTCAGACTTTATGCTTGTTGGCTTTGTTGAGGCAGGAGAATATCCAGCTCTGCCTGTAAACATTTTTCTTTTGTGATAGATGAATAACATTTTGTCAGTAATTACTTTACTTGTGTATATAAAAAAACAACGCATTCAAAGTTTTATTGAATCAATTAAACGTATTACATTTTACAAACATGTAAGACCTTGTTTATTTAGACTGTTTGGATGATATGGACTTATGAACATATAAAATGAATAAAAGTGTGCTTGTGGATGTGTGTGTGCGCGCATGTGTGTGTCTATATTAGGAGCATGCGAGGGCACTCTGGCCTGTTCCACC
TGTCACTTGATA/- TTTGAGGAGAATGTGTTTGACAAACTGGAGCCAATGGTGGATGAAGAGATTGACATGCTGGATTTGGCTTACGGAATCACCAAGACGTAAGAATCCTGGATTTAATATATAAAGCTTGTCTGATTAAGTCAGTAATGAGTGCTAAAAATGTCCATAAATATTTCTATAATAATAACAACAATGCATATTATAGTTTAATTAGAGTGTTATGTTGTTTTCATTCATTTAAAATATTTATTATATATTCATTAAGAATGAAATGGACTAGAATTAATATGGCATGATGAAATATTGACTAAAAGTACAGGTAAACAGCAAACTTTCCTTTATTAAAACGTATAGCTCTTTTTTTTTTCTCTGCAAATTGTTGCAATGATTTTTTGGTGCTGTTTTCTCATTGGCTCAGATCTCGATTGGGTTGTCAGGTGACTGTGGAGCGCTGGATGGACGGAATGACTGTTCGCGTGCCACAAGATATCAAAGATCAACGAGGAAAACAA
Additional Sequence
None
Fish
Fish Genomic Feature Zygosity Parental Zygosity Affected Genomic Regions Phenotype Gene Expression
fdx1buob205/uob205Homozygous♀+/- ♂+/-7 figures with image from 2 publications5 figures with image from 2 publications
fdx1buob205/uob205HomozygousUnknown4 figures from Oakes et al., 20194 figures from Oakes et al., 2019
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Supplemental Information
Genotyping protocol
None
Citations