Genomic Feature
ct810
- ID
- ZDB-ALT-131122-9
- Name
- ct810
- Synonyms
- None
- Affected Genomic Region
- Construct
- None
- Type
- Allele with one deletion (1)
- Protocol
- embryos treated with
- Lab of Origin
- Prober Lab
- Current Source
- Other Pages
Notes
No data available
Variants
- Variant Type
- Small Deletion
- Variant Location
- Chr 20: 22045248 - 22045251 (GRCz11) (1) Details
- Nucleotide change
- GATG/-
- Variant Notes
-
4bp deletion (GATG)
Effect on DNA/cDNA, transcript, protein (from publications)
- DNA/cDNA Change
- 4 bp deleted (1)
- Transcript Consequence
- None
- Protein Consequence
- None
- Flanking Sequence
-
GGAGGGACCACAACATGCATATTTAATGAATATAAACAGTAATTGTGCATGTATATCAGTCAGTGAACATCATCCCTTTTCTGTGATCCCTGTAATCATTATATTTCTAGACTTTCAACCCAAAACTCTTCAAATATTTATTTCTCTAACGTTTGTCATTTAACAAGCAATATTCTTTTTTTAAAAGTCTGATGTACGCTTTTAGAAGCATTATTATGCAGTGCCTATATGTTAACATGAAAGGTTGAAACATAAAGAATTCGGATGTTCCCACTCACAAATCATAATCGTTTGTGTAAATGTATCACGTGCAGGGGCTCATTCAATATGACGTGGGTTTAGGCAGAGGGCGTGTAACTGCGAGAGTTGATAATGTTTGCCTGGTAAGTGTGAGTGAGAATTAAAGCATCAGACTGACCGACAGAGAGCATGAGGAACAGCAATCAATGTGAACGCGCAACCGCTCACAGCGCGATGAGCCCGGGAAACACCTCCGCCCT
GATG/- CTCGCGGTACTACTCCTCTCCTTCATACCCATCACCACAAGTAAGTCTAAACCATACATCTGCGTTTTTACTGTTTTAATCGTATTTAAGTTAAGAAGTTTTGTCGTCTAGAACTTCTCTTCTCTTTTTTAATGAACTATCTCTTCGTTAAAAAGCTAGTTTTCCACGTGAGGGTTTTCATTCTGTCAAACTTAAATCTAAATTGTTGGGTTGAAACTGCGAAACAATTTTGTTAATAGTGCGCTAATAATAATAAAATATTGTTAATGCATAAAATAACATTTCAAGAAATAATAGCAATTTATCTGCAAAACTGACTGCATCATAGACAGCCTAAAGGTTTTGTTGGGTCGCATTCTTCGTGTTGGGAAAACCCCAAAGCAAATGAGTCAAGTGAGGATTTCCTGAAGGATAAAAGCATTAGTCACATTAATTTTAGTTTTTTTTTATTCTAGTTTATCAGGATTTATGATTAACAGTTATGTGTTTGAGTAAAATGA - Additional Sequence
- None
Fish
| Fish | Genomic Feature Zygosity | Parental Zygosity | Affected Genomic Regions | Phenotype | Gene Expression |
|---|---|---|---|---|---|
| nmuct810/ct810 | Homozygous | ♀+/- ♂+/- | 2 figures  from Chiu et al., 2016 | ||
| nmuct810/+ | Heterozygous | Unknown | 2 figures from Chiu et al., 2016 |
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Supplemental Information
- Genotyping protocol
- None
- Chiu, C.N., Rihel, J., Lee, D.A., Singh, C., Mosser, E.A., Chen, S., Sapin, V., Pham, U., Engle, J., Niles, B.J., Montz, C.J., Chakravarthy, S., Zimmerman, S., Salehi-Ashtiani, K., Vidal, M., Schier, A.F., Prober, D.A. (2016) A Zebrafish Genetic Screen Identifies Neuromedin U as a Regulator of Sleep/Wake States. Neuron. 89:842-856
- Chen, S., Oikonomou, G., Chiu, C.N., Niles, B.J., Liu, J., Lee, D.A., Antoshechkin, I., and Prober, D.A. (2013) A large-scale in vivo analysis reveals that TALENs are significantly more mutagenic than ZFNs generated using context-dependent assembly. Nucleic acids research. 41(4):2769-2778
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