ZFIN ID: ZDB-LAB-120215-1
Ben Odermatt Lab
PI/Director: Odermatt, Benjamin
Contact Person: Odermatt, Benjamin
Email: b.odermatt@uni-bonn.de
URL: https://www.anatomie.uni-bonn.de/de/forschung/ag-odermatt
Address: CNS Myelin Research Group Zebrafish Core-Facility / Medical Faculty / University of Bonn Anatomical Institute University of Bonn (Medical Faculty) Nussallee 10; Room O-11.2 53115 Bonn Germany
Country: Germany
Phone: ++49 228 739021
Fax: ++49 228 73992647
Line Designation: bn


GENOMIC FEATURES ORIGINATING FROM THIS LAB
Show all 3 genomic features


STATEMENT OF RESEARCH INTERESTS
Investigating Myelination in vivo
Investigating Nephric & Urogenital Development in vivo
Zebrafish Core-Facility / Medical Faculty / University of Bonn
https://btc.uni-bonn.de/zebrafish/


LAB MEMBERS
Ishorst, Nina Post-Doc Schöpper, Hanna Post-Doc Berger, Catarina Graduate Student
Lindenberg, Tobias Technical Staff Kleinert, Henning Liu, Changsheng
Nagarajan, Bhuvaneswari


ZEBRAFISH PUBLICATIONS OF LAB MEMBERS
Reinhardt, F., Coen, L., Rivandi, M., Franken, A., Setyono, E.S.A., Lindenberg, T., Eberhardt, J., Fehm, T., Niederacher, D., Knopf, F., Neubauer, H. (2023) DanioCTC: Analysis of Circulating Tumor Cells from Metastatic Breast Cancer Patients in Zebrafish Xenografts. Cancers. 15(22):
Kolvenbach, C.M., Dworschak, G.C., Rieke, J.M., Woolf, A.S., Reutter, H., Odermatt, B., Hilger, A.C. (2023) Modelling human lower urinary tract malformations in zebrafish. Molecular and cellular pediatrics. 10:22
Enders, M., Weier, A., Chunder, R., An, Y., Bremm, F., Feigenspan, A., Buettner, C., Ekici, A.B., Mingardo, E., Odermatt, B., Kuerten, S. (2023) Impact of the Voltage-Gated Calcium Channel Antagonist Nimodipine on the Development of Oligodendrocyte Precursor Cells. International Journal of Molecular Sciences. 24(4):
Kolvenbach, C.M., Felger, T., Schierbaum, L., Thiffault, I., Pastinen, T., Szczepańska, M., Zaniew, M., Adamczyk, P., Bayat, A., Yilmaz, Ö., Lindenberg, T.T., Thiele, H., Hildebrandt, F., Hinderhofer, K., Moog, U., Hilger, A.C., Sullivan, B., Bartik, L., Gnyś, P., Grote, P., Odermatt, B., Reutter, H.M., Dworschak, G.C. (2022) X-linked variations in SHROOM4 are implicated in congenital anomalies of the urinary tract and the anorectal, cardiovascular and central nervous systems. Journal of Medical Genetics. 60(6):587-596
Häberlein, F., Mingardo, E., Merten, N., Schulze Köhling, N.K., Reinoß, P., Simon, K., Japp, A., Nagarajan, B., Schrage, R., Pegurier, C., Gillard, M., Monk, K.R., Odermatt, B., Kostenis, E., Gomeza, J. (2022) Humanized zebrafish as a tractable tool for in vivo evaluation of pro-myelinating drugs. Cell chemical biology. 29(10):1541-1555.e7
Harder, A., Nagarajan, B., Odermatt, B., Kubitscheck, U. (2022) Automatic detector synchronization for long-term imaging using confocal light-sheet microscopy. Microscopy research and technique. 86(2):125-136
Wilms, C., Lepka, K., Häberlein, F., Edwards, S., Felsberg, J., Pudelko, L., Lindenberg, T.T., Poschmann, G., Qin, N., Volbracht, K., Prozorovski, T., Meuth, S.G., Kahlert, U.D., Remke, M., Aktas, O., Reifenberger, G., Bräutigam, L., Odermatt, B., Berndt, C. (2021) Glutaredoxin 2 promotes SP-1-dependent CSPG4 transcription and migration of wound healing NG2 glia and glioma cells: Enzymatic Taoism. Redox Biology. 49:102221
Turan, F., Yilmaz, Ö., Schünemann, L., Lindenberg, T.T., Kalanithy, J.C., Harder, A., Ahmadi, S., Duman, T., MacDonald, R.B., Winter, D., Liu, C., Odermatt, B. (2021) Effect of modulating glutamate signaling on myelinating oligodendrocytes and their development-A study in the zebrafish model. Journal of neuroscience research. 99(11):2774-2792
Dworschak, G.C., Punetha, J., Kalanithy, J.C., Mingardo, E., Erdem, H.B., Akdemir, Z.C., Karaca, E., Mitani, T., Marafi, D., Fatih, J.M., Jhangiani, S.N., Hunter, J.V., Dakal, T.C., Dhabhai, B., Dabbagh, O., Alsaif, H.S., Alkuraya, F.S., Maroofian, R., Houlden, H., Efthymiou, S., Dominik, N., Salpietro, V., Sultan, T., Haider, S., Bibi, F., Thiele, H., Hoefele, J., Riedhammer, K.M., Wagner, M., Guella, I., Demos, M., Keren, B., Buratti, J., Charles, P., Nava, C., Héron, D., Heide, S., Valkanas, E., Waddell, L.B., Jones, K.J., Oates, E.C., Cooper, S.T., MacArthur, D., Syrbe, S., Ziegler, A., Platzer, K., Okur, V., Chung, W.K., O'Shea, S.A., Alcalay, R., Fahn, S., Mark, P.R., Guerrini, R., Vetro, A., Hudson, B., Schnur, R.E., Hoganson, G.E., Burton, J.E., McEntagart, M., Lindenberg, T., Yilmaz, Ö., Odermatt, B., Pehlivan, D., Posey, J.E., Lupski, J.R., Reutter, H. (2021) Biallelic and monoallelic variants in PLXNA1 are implicated in a novel neurodevelopmental disorder with variable cerebral and eye anomalies. Genetics in medicine : official journal of the American College of Medical Genetics. 23(9):1715-1725
Rieke, J.M., Zhang, R., Braun, D., Yilmaz, Ö., Japp, A.S., Lopes, F.M., Pleschka, M., Hilger, A.C., Schneider, S., Newman, W.G., Beaman, G.M., Nordenskjöld, A., Ebert, A.K., Promm, M., Rösch, W.H., Stein, R., Hirsch, K., Schäfer, F.M., Schmiedeke, E., Boemers, T.M., Lacher, M., Kluth, D., Gosemann, J.H., Anderberg, M., Barker, G., Holmdahl, G., Läckgren, G., Keene, D., Cervellione, R.M., Giorgio, E., Di Grazia, M., Feitz, W.F.J., Marcelis, C.L.M., Van Rooij, I.A.L.M., Bökenkamp, A., Beckers, G.M.A., Keegan, C.E., Sharma, A., Dakal, T.C., Wittler, L., Grote, P., Zwink, N., Jenetzky, E., Brusco, A., Thiele, H., Ludwig, M., Schweizer, U., Woolf, A.S., Odermatt, B., Reutter, H. (2020) SLC20A1 Is Involved in Urinary Tract and Urorectal Development. Frontiers in cell and developmental biology. 8:567
van Rooij, I.A., Ludwig, K.U., Welzenbach, J., Ishorst, N., Thonissen, M., Galesloot, T.E., Ongkosuwito, E., Bergé, S.J., Aldhorae, K., Rojas-Martinez, A., Kiemeney, L.A., Vermeesch, J.R., Brunner, H., Roeleveld, N., Devriendt, K., Dormaar, T., Hens, G., Knapp, M., Carels, C., Mangold, E. (2019) Non-Syndromic Cleft Lip with or without Cleft Palate: Genome-Wide Association Study in Europeans Identifies a Suggestive Risk Locus at 16p12.1 and Supports SH3PXD2A as a Clefting Susceptibility Gene. Genes. 10(12):
Nagarajan, B., Harder, A., Japp, A., Häberlein, F., Mingardo, E., Kleinert, H., Yilmaz, Ö., Zoons, A., Rau, B., Christ, A., Kubitscheck, U., Eiberger, B., Sandhoff, R., Eckhardt, M., Hartmann, D., Odermatt, B. (2019) CNS myelin protein 36K regulates oligodendrocyte differentiation through Notch. Glia. 68(3):509-527
Kolvenbach, C.M., Dworschak, G.C., Frese, S., Japp, A.S., Schuster, P., Wenzlitschke, N., Yilmaz, Ö., Lopes, F.M., Pryalukhin, A., Schierbaum, L., van der Zanden, L.F.M., Kause, F., Schneider, R., Taranta-Janusz, K., Szczepańska, M., Pawlaczyk, K., Newman, W.G., Beaman, G.M., Stuart, H.M., Cervellione, R.M., Feitz, W.F.J., van Rooij, I.A.L.M., Schreuder, M.F., Steffens, M., Weber, S., Merz, W.M., Feldkötter, M., Hoppe, B., Thiele, H., Altmüller, J., Berg, C., Kristiansen, G., Ludwig, M., Reutter, H., Woolf, A.S., Hildebrandt, F., Grote, P., Zaniew, M., Odermatt, B., Hilger, A.C. (2019) Rare Variants in BNC2 Are Implicated in Autosomal-Dominant Congenital Lower Urinary-Tract Obstruction. American journal of human genetics. 104:994-1006
Yu, W.Q., El-Danaf, R.N., Okawa, H., Pacholec, J.M., Matti, U., Schwarz, K., Odermatt, B., Dunn, F.A., Lagnado, L., Schmitz, F., Huberman, A.D., Wong, R.O.L. (2018) Synaptic Convergence Patterns onto Retinal Ganglion Cells Are Preserved despite Topographic Variation in Pre- and Postsynaptic Territories. Cell Reports. 25:2017-2026.e3
Engerer, P., Suzuki, S.C., Yoshimatsu, T., Chapouton, P., Obeng, N., Odermatt, B., Williams, P.R., Misgeld, T., Godinho, L. (2017) Uncoupling of neurogenesis and differentiation during retinal development. The EMBO journal. 36(9):1134-1146
Ralser, D.J., Basmanav, F.B., Tafazzoli, A., Wititsuwannakul, J., Delker, S., Danda, S., Thiele, H., Wolf, S., Busch, M., Pulimood, S.A., Altmüller, J., Nürnberg, P., Lacombe, D., Hillen, U., Wenzel, J., Frank, J., Odermatt, B., Betz, R.C. (2017) Mutations in γ-secretase subunit-encoding PSENEN underlie Dowling-Degos disease associated with acne inversa. The Journal of Clinical Investigation. 127(4):1485-1490
Zhang, R., Knapp, M., Suzuki, K., Kajioka, D., Schmidt, J.M., Winkler, J., Yilmaz, Ö., Pleschka, M., Cao, J., Kockum, C.C., Barker, G., Holmdahl, G., Beaman, G., Keene, D., Woolf, A.S., Cervellione, R.M., Cheng, W., Wilkins, S., Gearhart, J.P., Sirchia, F., Di Grazia, M., Ebert, A.K., Rösch, W., Ellinger, J., Jenetzky, E., Zwink, N., Feitz, W.F., Marcelis, C., Schumacher, J., Martinón-Torres, F., Hibberd, M.L., Khor, C.C., Heilmann-Heimbach, S., Barth, S., Boyadjiev, S.A., Brusco, A., Ludwig, M., Newman, W., Nordenskjöld, A., Yamada, G., Odermatt, B., Reutter, H. (2017) ISL1 is a major susceptibility gene for classic bladder exstrophy and a regulator of urinary tract development. Scientific Reports. 7:42170
Pelassa, I., Zhao, C., Pasche, M., Odermatt, B., Lagnado, L. (2014) Synaptic vesicles are "primed" for fast clathrin-mediated endocytosis at the ribbon synapse. Frontiers in molecular neuroscience. 7:91
Baden, T., Nikolaev, A., Esposti, F., Dreosti, E., Odermatt, B., Lagnado, L. (2014) A synaptic mechanism for temporal filtering of visual signals. PLoS Biology. 12:e1001972
Nikolaev, A., Leung, K.M., Odermatt, B., and Lagnado, L. (2013) Synaptic mechanisms of adaptation and sensitization in the retina. Nature Neuroscience. 16(7):934-41
Li, Y., Du, X.F., Liu, C.S., Wen, Z.L., and Du, J.L. (2012) Reciprocal Regulation between Resting Microglial Dynamics and Neuronal Activity In Vivo. Developmental Cell. 23(6):1189-1202
Odermatt, B., Nikolaev, A., and Lagnado, L. (2012) Encoding of luminance and contrast by linear and nonlinear synapses in the retina. Neuron. 73(4):758-773
Hunter, P.R., Nikolaou, N., Odermatt, B., Williams, P.R., Drescher, U., and Meyer, M.P. (2011) Localization of cadm2a and cadm3 proteins during development of the zebrafish nervous system. The Journal of comparative neurology. 519(11):2252-70
Dorostkar, M.M., Dreosti, E., Odermatt, B., and Lagnado, L. (2010) Computational processing of optical measurements of neuronal and synaptic activity in networks. Journal of Neuroscience Methods. 188(1):141-150
Dreosti, E., Odermatt, B., Dorostkar, M.M., and Lagnado, L. (2009) A genetically encoded reporter of synaptic activity in vivo. Nature Methods. 6(12):883-889